Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0492
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 202 5e-53
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 30 0.25
SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyc... 28 1.3
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 27 1.8
SPCC191.08 |||DUF1715 family protein|Schizosaccharomyces pombe|c... 27 2.3
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 26 4.1
SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr 3||... 26 4.1
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 26 4.1
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos... 26 4.1
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c... 26 5.4
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo... 26 5.4
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ... 25 7.1
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 25 9.4
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 25 9.4
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 25 9.4
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom... 25 9.4
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 25 9.4
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 25 9.4
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 202 bits (492), Expect = 5e-53
Identities = 98/204 (48%), Positives = 137/204 (67%), Gaps = 1/204 (0%)
Frame = +2
Query: 2 ITGLVNYFGKWTDYTHVRISPVLLQKGLTRLALYGLSHLKDQRLSRLFAEKKVEMERPDE 181
+TGLVNYFG+ + ++ +SP+LLQKG T+LALYG+S+++D+RL F E KV+ RPD
Sbjct: 151 VTGLVNYFGRVPENDNIVVSPILLQKGFTKLALYGISNVRDERLYHSFRENKVKFLRPDL 210
Query: 182 TLD-WFNLFVLHQNHADRGHSNYIPEGVLPNFLDLVVWGHEHDSHICPMKGNKTEKDSFF 358
D WFNL +HQNH+ ++Y+PE + +F D V+WGHEH+ C + G+ F
Sbjct: 211 YRDEWFNLLTVHQNHSAHTPTSYLPESFIQDFYDFVLWGHEHE---CLIDGSYNPTQKFT 267
Query: 359 VVQPGSTVATSLAAGEALPKHCGLLEIHKGNFKLTPLPLQTVRPFIFKTIVLSEENIGSE 538
VVQPGST+ATSL+ GE PKHCG+L I +F L + L+TVRPFI K I+LSE +
Sbjct: 268 VVQPGSTIATSLSPGETAPKHCGILNITGKDFHLEKIRLRTVRPFIMKDIILSEVSSIPP 327
Query: 539 DVNENEKVQEFLKNRVNEAIDEAS 610
V ++V +L ++V EAI EA+
Sbjct: 328 MVENKKEVLTYLISKVEEAITEAN 351
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 30.3 bits (65), Expect = 0.25
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -1
Query: 348 SFSVLFPFIGQIWLSCSWPHTTRS-KKFGST 259
SF+ LFP + +L WPH TR+ KFG T
Sbjct: 53 SFATLFPKYREKYLREVWPHVTRALDKFGIT 83
>SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 266
Score = 27.9 bits (59), Expect = 1.3
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -1
Query: 459 NLKFPLCISNKPQCLGSASPAAKEVATVLPGCTTKKLSFSVLFPFIGQIW-LSCSWPHTT 283
++ PL SN+ G A V V+ CT KKLS V+F +W S ++P TT
Sbjct: 112 SMSHPLIWSNRNLREGDVRRAT--VLDVIAKCTEKKLSV-VIFSPSALLWDQSINFPRTT 168
Query: 282 R 280
R
Sbjct: 169 R 169
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +2
Query: 548 ENEKVQEFLKNRVNEAIDEASKLK 619
+NEK +E ++++V E +D A KLK
Sbjct: 48 KNEKSKEIIRSKVIEYLDRAEKLK 71
>SPCC191.08 |||DUF1715 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 134
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 185 LDWFNLFVLHQNHADRGHSNYIPEGVLPNFLDLVVWGHEH 304
+DW + L +N RG+ I +G+ + + ++G EH
Sbjct: 1 MDWEEVTKLEENEYKRGYDEGILKGIEQGYEEAFLFGLEH 40
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 518 EENIGSEDVNENEKVQEFLKNRVNEAIDEASKLKTADLRQXLL 646
+EN+ +D + E Q L+ +NE ++ KL+ A L+ L
Sbjct: 619 KENLKEDDNHPRESPQGNLQRELNELDEDKRKLEEAKLQSRFL 661
>SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 327
Score = 26.2 bits (55), Expect = 4.1
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = +2
Query: 233 GHSNYIPEGVLPNFLDLVVWGHEHDSHICPMKGNKTEKDSFFVVQPGSTVATSLAAGEAL 412
G I G+L FL W H + S +GN K+ F+ G++ T + A
Sbjct: 234 GGQGDILTGILATFL---AWRHAYLSKEWDTEGNMDAKECLFLAAFGASACTRWCSRLAF 290
Query: 413 PKHCG 427
K CG
Sbjct: 291 -KECG 294
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +3
Query: 399 QEKHFLSIVVY*KYIKEISS*LLCHCKQ*GLLYLKP 506
Q K + V+ YIK + LL CKQ G+ YLKP
Sbjct: 1534 QNKLTVHSVLTFDYIKLMVQMLLQLCKQGGIQYLKP 1569
>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 245 YIPEGVLPNFLDLVVWGHEHDSHICPMK 328
++PE +L NF+ L+ W S PMK
Sbjct: 296 FLPEAIL-NFIALMGWSSRQKSDFLPMK 322
>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 679
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 560 VQEFLKNRVNEAIDEASK 613
+ EFL+ RVNE++D SK
Sbjct: 9 IPEFLETRVNESLDARSK 26
>SPAC26H5.07c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 505
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = +2
Query: 17 NYFGKW--TDYTHVRISPVLL 73
NYFG TDY H+ ++P+LL
Sbjct: 168 NYFGNLDATDYPHLFLNPILL 188
>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 324
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -2
Query: 359 QKSCLSLFYFPSLDKYGYHAHGPTLQDLKSLVALLLEYSY 240
+K S+ Y PS +YG +GP++ D+ ++ A++ S+
Sbjct: 272 EKHVSSMEYAPS--EYGPSEYGPSINDITNMSAVIYPDSF 309
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 119 KDQRLSRLFAEKKVEMERPDETLD 190
KD RLSR+ AEK+ ++ D D
Sbjct: 404 KDLRLSRMGAEKRAKLAEKDRPRD 427
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 548 ENEKVQEFLKNRVNEAIDEASKLK 619
ENE +Q+ L+N NE ++ ++K
Sbjct: 145 ENENLQDMLRNVGNELVESRDEIK 168
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/34 (35%), Positives = 14/34 (41%)
Frame = +2
Query: 296 HEHDSHICPMKGNKTEKDSFFVVQPGSTVATSLA 397
H + ICP G KD F V + SLA
Sbjct: 289 HLDEGTICPADGRLITKDCFLQVDQSAITGESLA 322
>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 25.0 bits (52), Expect = 9.4
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = -2
Query: 398 QLKRLPQYYLVVQQKSCLSLFY---FPSLDKYGYHAHGPTLQDLKSLVALLLEYSYCVLC 228
+L R+ Q ++Q S LS F L+ Y Y ++ L +LV Y C L
Sbjct: 357 ELCRIIQNPQIIQIPSTLSFFLEILTKLLEIYSYRISAHHVELLMALVVCSRNYMRCNLQ 416
Query: 227 QHDFDVVQ 204
+H +VQ
Sbjct: 417 EHHNAIVQ 424
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 509 VLSEENI--GSEDVNENEKVQEFLKNRVNEAIDE 604
+LS++NI +E+ NEN+ +E + NEA D+
Sbjct: 78 LLSDQNITISNENNNENDTTEEAETSSGNEAADD 111
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 25.0 bits (52), Expect = 9.4
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Frame = +2
Query: 368 PGSTVATSLAAGEALPKHCGLLEIHKGNFKLTPLPLQTVRP--FIFKTIVL-------SE 520
P TVA L + +PK + E+H K+T ++ V+ I KTI L SE
Sbjct: 264 PPVTVAEVLEIEDKVPKVDEVEEVHSPEAKVTENDVENVQSGIDIEKTIQLLNNQEIPSE 323
Query: 521 ENIGSEDVNENEKVQEFLKNRVNEAIDE 604
+ I S D VQE + + +DE
Sbjct: 324 QQIISVDKATESPVQEVAVDVNEKPVDE 351
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,554,980
Number of Sequences: 5004
Number of extensions: 53960
Number of successful extensions: 169
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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