Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0492
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36848| Best HMM Match : No HMM Matches (HMM E-Value=.)             150   1e-36
SB_44713| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   4e-05
SB_23572| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-22)                 32   0.35 
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)                  30   1.4  
SB_24809| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_29485| Best HMM Match : PT (HMM E-Value=4.8)                        29   3.3  
SB_31090| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_53791| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_52614| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_36848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score =  150 bits (363), Expect = 1e-36
 Identities = 75/131 (57%), Positives = 90/131 (68%), Gaps = 2/131 (1%)
 Frame = +2

Query: 77  KGLTRLALYGLSHLKDQRLSRLFAEKKVEMERPDETLD-WFNLFVLHQNHADRGHSNYIP 253
           KG T+LALYGL  ++D+RL R F   KV+M RP E  D WFN FVLHQN A  GH+NYIP
Sbjct: 132 KGATKLALYGLGSVRDERLHRTFVNNKVKMLRPKEDPDSWFNAFVLHQNRAKHGHTNYIP 191

Query: 254 EGVLPNFLDLVVWGHEHDSHICPMKGNKTEKDSFFVVQPGSTVATSLAAGEALPKHCGLL 433
           E  L  FLDLVVWGHEH+  I P + + T    F++ QPGSTVATSL+ GE+  KH G+L
Sbjct: 192 EKFLDTFLDLVVWGHEHECLIDPRQSDDTSL-PFWITQPGSTVATSLSPGESKQKHVGIL 250

Query: 434 EIHKGN-FKLT 463
           EI     FK+T
Sbjct: 251 EIRPDKAFKMT 261


>SB_44713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 54

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
 Frame = +2

Query: 419 HCGLLEIHKGN-FKLTPLPLQTVRPFIFKTIVLSEENIGSEDVNENEKVQEFLKNR 583
           H G+LEI     FK+T +PLQTVRPF  + I+LS+ ++   D  + E++  FL ++
Sbjct: 2   HVGILEIRPDKAFKMTKVPLQTVRPFYMEDIILSDTDL---DPADEERIYAFLTDK 54


>SB_23572| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-22)
          Length = 269

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 491 FIFKTIVLSEENIGSEDVNENEKVQEFLKNR 583
           FIFK+     + I SE V E +K  E LKNR
Sbjct: 186 FIFKSAKYQRQRIASESVTERKKRNEILKNR 216


>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
          Length = 2072

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/46 (28%), Positives = 28/46 (60%)
 Frame = +2

Query: 500  KTIVLSEENIGSEDVNENEKVQEFLKNRVNEAIDEASKLKTADLRQ 637
            + + L  + + S ++ E EKV+E +K  +NE + +  K+ + +LR+
Sbjct: 1840 RALELDHDQMLSSEIREKEKVEEQMKREMNE-LKDGCKIHSNELRE 1884


>SB_24809| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 780

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 405 SPAAKEVATVLPGCTTKKLSFSVLFPFIGQI 313
           SP AKE +T +P  TT++ S ++  P   QI
Sbjct: 217 SPMAKETSTAMPSPTTRQTSTAIPLPMSRQI 247


>SB_29485| Best HMM Match : PT (HMM E-Value=4.8)
          Length = 280

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +2

Query: 149 EKKVEMERPDETLDWFNLFVLHQNHADRGHSNYIPEGVLPNFLDL 283
           E KV M+R D + D  +  VL+  H  RG+S+++ E  +   LD+
Sbjct: 191 ENKV-MQRRDMSRDLSHTTVLYVTHRHRGNSDFVVENNVTKRLDI 234


>SB_31090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 502

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +2

Query: 449 NFKLTPLPLQTVRPFIFKTIVLSEENIGSEDVNENEKVQEFLKNRVNEAIDEASKLK 619
           N+K     +  +RP     I++ E+N  S+   +  K ++FLK+  N    EA K+K
Sbjct: 50  NWKALQSVMNLLRPLKLH-ILMEEKNKNSDKSEKTRKPKKFLKSLKNLKEKEAKKIK 105


>SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1047

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 165 WRDPMKHWTGSI 200
           W+DP  HWTGSI
Sbjct: 656 WQDPSLHWTGSI 667


>SB_53791| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1186

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 315 IWLSCSWPHTTRSKKFGST 259
           +WLS  W H  R ++ GST
Sbjct: 661 LWLSSEWTHFPRDQRLGST 679


>SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1524

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +2

Query: 500  KTIVLSEE-NIGSEDVNENEKVQEFLKNRVNE 592
            + I+L+ E  + +  +NE++K  E LKNR+NE
Sbjct: 1035 EVIILTHEIELKTARLNESKKENENLKNRINE 1066


>SB_52614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 473 LQTVRPFIFKTIVLSEENIGSEDVNENEKVQE 568
           L  + P I+K I+L    IG  DVNE + +++
Sbjct: 109 LHGIDPRIYKNILLPISMIGERDVNEKQLIKK 140


>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 518 EENIGSEDVNENEKVQEFLKNRVNEAIDE 604
           EE   +EDVN++E+ QE  +    E IDE
Sbjct: 225 EEEEEAEDVNDDEQQQEDGEEEATEVIDE 253


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,560,888
Number of Sequences: 59808
Number of extensions: 377053
Number of successful extensions: 911
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)