Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0492
(648 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g54260.1 68418.m06759 DNA repair and meiosis protein (Mre11) ... 160 8e-40
At3g02125.1 68416.m00179 hypothetical protein 35 0.054
At2g27880.1 68415.m03380 argonaute protein, putative / AGO, puta... 32 0.38
At2g35140.1 68415.m04310 expressed protein ; expression supporte... 31 0.66
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 29 2.7
At4g40020.1 68417.m05666 hypothetical protein 29 3.5
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ... 28 4.7
At3g50380.1 68416.m05511 expressed protein 28 4.7
At3g50240.1 68416.m05494 kinesin motor protein-related KINESIN-L... 28 4.7
At3g05360.1 68416.m00584 disease resistance family protein / LRR... 28 4.7
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 28 6.1
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 28 6.1
At2g39130.1 68415.m04807 amino acid transporter family protein b... 28 6.1
At1g66470.1 68414.m07551 basic helix-loop-helix (bHLH) family pr... 28 6.1
At5g29624.1 68418.m03640 DC1 domain-containing protein contains ... 27 8.1
>At5g54260.1 68418.m06759 DNA repair and meiosis protein (Mre11)
identical to DNA repair and meiosis protein (Mre11)
GI:5524769 from [Arabidopsis thaliana]
Length = 720
Score = 160 bits (388), Expect = 8e-40
Identities = 89/211 (42%), Positives = 124/211 (58%), Gaps = 10/211 (4%)
Frame = +2
Query: 11 LVNYFGKW----TDYTHVRISPVLLQKGLTRLALYGLSHLKDQRLSRLF-AEKKVEMERP 175
LVNYFGK + + + P+L++KG T +ALYGL +++D+RL+R+F V+ RP
Sbjct: 145 LVNYFGKMVLGGSGVGQITLYPILMKKGSTTVALYGLGNIRDERLNRMFQTPHAVQWMRP 204
Query: 176 D-----ETLDWFNLFVLHQNHADRGHSNYIPEGVLPNFLDLVVWGHEHDSHICPMKGNKT 340
+ + DWFN+ VLHQN N I E LP FLD +VWGHEH+ I P + +
Sbjct: 205 EVQEGCDVSDWFNILVLHQNRVKSNPKNAISEHFLPRFLDFIVWGHEHECLIDPQEVSGM 264
Query: 341 EKDSFFVVQPGSTVATSLAAGEALPKHCGLLEIHKGNFKLTPLPLQTVRPFIFKTIVLSE 520
F + QPGS+VATSL GE+ PKH LLEI ++ T +PL +VRPF + IVL +
Sbjct: 265 ---GFHITQPGSSVATSLIDGESKPKHVLLLEIKGNQYRPTKIPLTSVRPFEYTEIVLKD 321
Query: 521 ENIGSEDVNENEKVQEFLKNRVNEAIDEASK 613
E+ D N+ + E L V I++ASK
Sbjct: 322 ES--DIDPNDQNSILEHLDKVVRNLIEKASK 350
>At3g02125.1 68416.m00179 hypothetical protein
Length = 355
Score = 34.7 bits (76), Expect = 0.054
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Frame = +2
Query: 290 WGHEHDSHICPMKGNKTEK--DSFFVVQPGSTVATSLAAGEALPKHCGLLEIHKGNFKL- 460
W H +H+ + G + S F +PG++ SLA+ E+ L IH GNF +
Sbjct: 75 WSSNHQNHLIDLPGYDPTRIPSSVFSSKPGNSTEWSLASNES------LFSIHDGNFSIS 128
Query: 461 TPLPLQTVRPFIFKTIVLSEEN 526
T L L + F V++E N
Sbjct: 129 TALRLAEIPRFEETVHVITEIN 150
>At2g27880.1 68415.m03380 argonaute protein, putative / AGO, putative
similar to SP|O04379 Argonaute protein (AGO1)
{Arabidopsis thaliana}; contains Pfam profiles PF02170:
PAZ domain, PF02171: Piwi domain
Length = 997
Score = 31.9 bits (69), Expect = 0.38
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +2
Query: 194 FNLFVLHQNHADRGHSNYIPEGVLPNFLDLVVWGHEHDSHICPMKGNKTEKDSFFVVQPG 373
F+ +LH+ A R N + E +P ++V H GN+ D +QPG
Sbjct: 814 FSQVLLHEMTAIRKACNSLQENYVPRVTFVIVQKRHHTRLFPEQHGNRDMTDKSGNIQPG 873
Query: 374 STVATSL 394
+ V T +
Sbjct: 874 TVVDTKI 880
>At2g35140.1 68415.m04310 expressed protein ; expression supported
by MPSS
Length = 879
Score = 31.1 bits (67), Expect = 0.66
Identities = 20/48 (41%), Positives = 24/48 (50%)
Frame = +2
Query: 101 YGLSHLKDQRLSRLFAEKKVEMERPDETLDWFNLFVLHQNHADRGHSN 244
+GLS + QRL +LF+ KKVE R ET L DRG N
Sbjct: 133 FGLSKAQVQRLLKLFSMKKVERSRLRETAAPKPLRKSENTVGDRGFRN 180
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 518 EENIGSEDVNENEKVQEFLKNRVNEAIDEASKL 616
EENI S+ V+ + F + +NE D ASKL
Sbjct: 187 EENIPSKSVDADTNADAFEDSMLNEIFDNASKL 219
>At4g40020.1 68417.m05666 hypothetical protein
Length = 615
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 509 VLSEENIGSEDVNENEKVQEFLKNRVNEA 595
+++ EN+ + EN KV++ LK +NEA
Sbjct: 281 LVAAENLSKKAKEENHKVRDILKQAINEA 309
>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 578
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 566 LEPFHFH*HPHCLYFP 519
+EPF FH H H LY P
Sbjct: 433 IEPFEFHGHKHPLYLP 448
>At3g50380.1 68416.m05511 expressed protein
Length = 3071
Score = 28.3 bits (60), Expect = 4.7
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Frame = +2
Query: 332 NKTEKDSFFVV--QPGSTVATSLAAGEALPKHC----GLLEIHKGNFKLTPLPLQTVRPF 493
+K ++D F V +PG ++ S+AA A+ L + GNF L+ RP
Sbjct: 1884 SKQKRDEFASVPLKPGGSIDDSVAAFNAISSSGDMKKALTSLAVGNFSLS------FRPE 1937
Query: 494 IFKTIVLSEENIGSEDVNENE 556
F+T+ E+++GSE E E
Sbjct: 1938 SFETLFEGEKSLGSEWSEELE 1958
>At3g50240.1 68416.m05494 kinesin motor protein-related KINESIN-LIKE
PROTEIN KIF4, Homo sapiens, EMBL:AF179308
Length = 1051
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 126 RDFHVFLLKKKWKWRDPMK 182
R H +LL+ KWKW+ P K
Sbjct: 995 RSHHQWLLQFKWKWQKPWK 1013
>At3g05360.1 68416.m00584 disease resistance family protein / LRR
family protein contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; similar to
elicitor-inducible LRR receptor-like protein EILP
[Nicotiana tabacum] gi|6635236|dbj|BAA88636; similar to
Cf-2.2 [Lycopersicon pimpinellifolium]
gi|1184077|gb|AAC15780
Length = 786
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 416 KHCGLLEIHKGNFK--LTPLPLQTVRPFIFKTIVLSEENIGSEDVNENEKVQEF 571
+H L++I + F L+PL R + + + NIG+ED EK EF
Sbjct: 523 QHLRLIDISQNGFSGTLSPLYFSNWREMVTSVLEENGSNIGTEDWYMGEKGPEF 576
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 518 EENIGSEDVNENEKVQEFL 574
EENI +D+++ EK QEF+
Sbjct: 280 EENISKQDLSDTEKFQEFM 298
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 518 EENIGSEDVNENEKVQEFL 574
EENI +D+++ EK QEF+
Sbjct: 280 EENISKQDLSDTEKFQEFM 298
>At2g39130.1 68415.m04807 amino acid transporter family protein
belongs to INTERPRO:IPR002422 amino acid/polyamine
transporter, family II
Length = 550
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 347 LSLFYFPSLDKYGYHAHGPTLQDLKSLVALLLEYSYC 237
L LF+ +D+ G H+ G TL +L +L + Y YC
Sbjct: 320 LCLFWIGLVDEVGIHSKGTTL-NLSTLPVAIGLYGYC 355
>At1g66470.1 68414.m07551 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 298
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 290 WGHEHDSHICPMKGNKTEKDSFFVVQPGSTVATSLAAGEAL-PKHCGLLEIHKG 448
W H+H I + +T + + STV T+ + E+L PK G H G
Sbjct: 124 WNHQHHMDIISPRSTETPQGQKDWLYSDSTVVTTGSRNESLSPKSAGNKRSHTG 177
>At5g29624.1 68418.m03640 DC1 domain-containing protein contains
Pfam PF03107: DC1 domain
Length = 488
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 566 LEPFHFH*HPHCLYFPLKA 510
LEPFH H H LYF L++
Sbjct: 401 LEPFHHDLHQHPLYFTLQS 419
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,143,701
Number of Sequences: 28952
Number of extensions: 273890
Number of successful extensions: 736
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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