Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0490
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|c...    27   1.7  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    27   2.2  
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    27   2.2  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   6.8  

>SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 313

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = -3

Query: 298 YIFFTHRIWLLPIIYVQGSYCRLVTFFFQASICLRMNTIIIRECAIVLQFQISIKKQTSY 119
           Y+FF + +    I+Y  G + R + F     I     T   +   +VL F ++ K + S 
Sbjct: 150 YLFFLYGLSGTSILYTAGDHIRKLDFKDSGFI-----TPFFQLLLLVLLFTLTFKSKHSL 204

Query: 118 NIKKNIASQF 89
           N     ASQF
Sbjct: 205 NAYSLTASQF 214


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +3

Query: 147 WNWSTIAHSRIIIVFILRHIDA*KKNVTKR 236
           +NW ++ HSR+I+V +   +D  ++ ++ R
Sbjct: 471 FNWPSLPHSRLIVVAVANTMDLPERILSNR 500


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/45 (24%), Positives = 26/45 (57%)
 Frame = -3

Query: 292 FFTHRIWLLPIIYVQGSYCRLVTFFFQASICLRMNTIIIRECAIV 158
           ++TH  W++P +    + C ++T F Q+ I L ++  + R  +++
Sbjct: 430 YYTHVHWIVPTLSGLLTGCGILTIFMQSLIYL-IDAYLFRAASVI 473


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +2

Query: 2   KNQTRKIIICVITSGRT 52
           K+  +K+++C+I+ GRT
Sbjct: 229 KDAWKKVVVCIISDGRT 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,808,451
Number of Sequences: 5004
Number of extensions: 33427
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)