Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0490
         (522 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0585 - 25230630-25230743,25230840-25231122,25231203-252313...    29   3.0  
04_03_0240 - 13228046-13228170,13228247-13228307,13229301-132293...    29   3.0  
01_06_1274 + 35905538-35905597,35905731-35905836,35906182-35906324     28   5.2  

>11_06_0585 -
           25230630-25230743,25230840-25231122,25231203-25231373,
           25231451-25232298,25232384-25232812,25232889-25233266,
           25233396-25233488
          Length = 771

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -3

Query: 205 ICLRMNTIIIRECAIVLQFQISIKKQTSYNIKKNIASQFILN-CTYPHGLTRG 50
           +C  M ++  +   + L+ ++S   + ++NI +   +QFILN    P G+ RG
Sbjct: 717 VCHNMRSLADKVTLLDLEEKLSAIPENNFNIIREEIAQFILNDLLLPKGMFRG 769


>04_03_0240 -
           13228046-13228170,13228247-13228307,13229301-13229368,
           13229979-13230051,13230130-13230231,13231473-13231592,
           13231795-13231913,13231990-13232047,13232152-13232208,
           13232719-13232851,13233534-13233591,13234592-13234601,
           13239996-13240961
          Length = 649

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 112 LYCSLFVFLLKFGTGVQLRTHVLL 183
           L+C+  VF LKFG  +   +HV+L
Sbjct: 353 LWCNFLVFSLKFGVWLSTSSHVML 376


>01_06_1274 + 35905538-35905597,35905731-35905836,35906182-35906324
          Length = 102

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
 Frame = -3

Query: 244 SYCRLVTFFFQASICLRMNTIIIRECAIVLQFQISIKKQTSYNIKKNIA---SQFILNCT 74
           SY RLV    +  IC  MN     EC   L+   +IK   +  + K +    S+F    T
Sbjct: 16  SYIRLVQHLIEKCICYNMNK---EECMETLEKHANIKPVITSTVWKELEKENSEFF--AT 70

Query: 73  YPHGLTRGPAAS 38
           Y  G    PA S
Sbjct: 71  YKKGQGEEPAES 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,282,779
Number of Sequences: 37544
Number of extensions: 168009
Number of successful extensions: 318
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)