Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0490
         (522 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to R...    28   3.3  
At3g47430.1 68416.m05157 peroxisomal biogenesis factor 11 family...    28   4.4  
At4g14905.2 68417.m02290 kelch repeat-containing F-box family pr...    27   7.7  
At4g14905.1 68417.m02289 kelch repeat-containing F-box family pr...    27   7.7  

>At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to RNA
           helicase SDE3 [Arabidopsis thaliana] GI:13811296
          Length = 1002

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -3

Query: 121 YNIKKNIASQFILNCTYPHGLTRGPAASNYANY 23
           Y I K I  + I N  +P  L  G  A NYANY
Sbjct: 217 YEIPKEIR-EMIENKEFPDDLNEGLTARNYANY 248


>At3g47430.1 68416.m05157 peroxisomal biogenesis factor 11 family
           protein / PEX11 family protein contains Pfam PF05648:
           Peroxisomal biogenesis factor 11 (PEX11)
          Length = 227

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = -3

Query: 298 YIFFTHRIWLLPIIYVQGSYCRLVTFFFQASICLRMNTIIIRECAIVLQFQISIKK 131
           Y FF H +WL  I  +     + ++F             II +C  + Q   S+KK
Sbjct: 98  YFFFDHFLWLSRIGSIDAKLAKKMSFISAFGESFGYTFFIIIDCIFIKQRLKSLKK 153


>At4g14905.2 68417.m02290 kelch repeat-containing F-box family
           protein contains Pfam PF01344: Kelch motif (2 copies)
           and PF00646: F-box domain; similar to putative SKP1
           interacting partner 6 (GP:21689879) (SKIP6) {Arabidopsis
           thaliana}|19798784|gb|AU230074.1|AU230074
          Length = 372

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -2

Query: 356 KLYFNESSCRIEMILIDLEIYIFYASNMVIAYHL 255
           +L+FNES C I+ +L     Y FY  N ++AY L
Sbjct: 259 RLWFNES-CPIDNVL-----YGFYCMNQILAYDL 286


>At4g14905.1 68417.m02289 kelch repeat-containing F-box family
           protein contains Pfam PF01344: Kelch motif (2 copies)
           and PF00646: F-box domain; similar to putative SKP1
           interacting partner 6 (GP:21689879) (SKIP6) {Arabidopsis
           thaliana}|19798784|gb|AU230074.1|AU230074
          Length = 372

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -2

Query: 356 KLYFNESSCRIEMILIDLEIYIFYASNMVIAYHL 255
           +L+FNES C I+ +L     Y FY  N ++AY L
Sbjct: 259 RLWFNES-CPIDNVL-----YGFYCMNQILAYDL 286


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,846,812
Number of Sequences: 28952
Number of extensions: 151758
Number of successful extensions: 286
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)