Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0488
         (502 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    23   1.5  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    23   1.5  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    23   1.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   1.5  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   2.0  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   4.7  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 358 KTEKVTKGGYKAPSLLNDEMFVEAKKRIEDVDIMGDPNSTVSVD 489
           KTE  +K  +   SLL+ +   E + R+ D D   D N TV  D
Sbjct: 5   KTEIKSKISFSVESLLSKKEDEEVEHRLSDRD-DDDENITVDDD 47


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -2

Query: 450 YIFDT--LLCFDKHLVIEQRGGLVPTFS 373
           +IF T  LL F  HL+ +  GGL  T+S
Sbjct: 127 HIFRTSVLLIFVMHLMFDTLGGLYSTWS 154


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -2

Query: 450 YIFDT--LLCFDKHLVIEQRGGLVPTFS 373
           +IF T  LL F  HL+ +  GGL  T+S
Sbjct: 127 HIFRTSVLLIFVMHLMFDTLGGLYSTWS 154


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 412 EMFVEAKKRIEDVDIMGDPNSTVSVDFKVQ 501
           ++ V ++KR  D  +   PN     DFK Q
Sbjct: 243 DLSVSSRKRSNDDSVSQPPNRKPRTDFKPQ 272


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 96  NHGVFRGDALALCVRDTLLIHHDTI 170
           NHG+ +GD L+ C+ +  +   D +
Sbjct: 303 NHGLLQGDPLSGCLCELYMAFMDRL 327


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -2

Query: 132 REPVRRHGRLHDCP 91
           R P R HG L  CP
Sbjct: 344 RMPHRCHGNLQSCP 357


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,877
Number of Sequences: 336
Number of extensions: 2892
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11839801
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)