Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0488
(502 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1218 - 31822915-31823141,31823418-31823832,31824090-318244... 31 0.52
07_03_0543 + 19272389-19272534,19273337-19273496,19273584-192737... 30 1.2
04_04_1615 + 34793511-34793660,34794013-34794070,34794163-347944... 29 2.8
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486... 29 2.8
02_01_0570 - 4195409-4195443,4196245-4196333,4196539-4196630,419... 28 4.8
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306... 27 6.4
03_05_0936 - 28955486-28955683,28956320-28956424,28956550-289566... 27 6.4
01_01_1215 + 9815918-9816218,9816772-9816912,9816988-9817106,981... 27 6.4
10_01_0145 - 1708597-1708824,1710225-1710468,1711217-1711263,171... 27 8.5
02_02_0592 - 11934238-11934249,11934755-11934835,11935166-119353... 27 8.5
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 27 8.5
01_02_0106 - 11175200-11175385,11175463-11175496,11175987-111762... 27 8.5
>04_04_1218 -
31822915-31823141,31823418-31823832,31824090-31824440,
31825391-31825549,31825965-31826093,31826257-31826460,
31827200-31827412,31827547-31830912,31830999-31831150,
31831912-31832407,31832646-31833456,31833537-31834728,
31834856-31834922
Length = 2593
Score = 31.1 bits (67), Expect = 0.52
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Frame = +3
Query: 24 VLQKCLILRQCTRSAFKTILTHEDN---HGVFR---GDALALCVRDTLLIHHDTIAQQQD 185
VL KC++ CTR+ L H D+ HG R LC D + + +D ++ +
Sbjct: 460 VLLKCIVPNMCTRAVINRGLLHSDDLVKHGALRLVFESVNLLC--DVIEVINDIVSNARV 517
Query: 186 PRAHDN 203
HDN
Sbjct: 518 KSEHDN 523
>07_03_0543 +
19272389-19272534,19273337-19273496,19273584-19273741,
19273852-19273945,19274082-19274198,19275119-19275229,
19275309-19275396,19275615-19275718,19275796-19275867,
19275950-19276039,19276151-19276308,19276746-19276752,
19277140-19277194,19277273-19277421,19277543-19277664,
19277916-19278105
Length = 606
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +3
Query: 54 CTRSAFKTILTHEDNHGVFRGDALALCVRDTLLIHHDTIAQQQDPR 191
C S F + E F+ D LCV +++H ++ Q+ PR
Sbjct: 484 CRTSGFSCVEMQEQRAWTFQADTYGLCVIAHMMLHGTQMSIQKTPR 529
>04_04_1615 +
34793511-34793660,34794013-34794070,34794163-34794410,
34794485-34794601,34795309-34795369,34795860-34795954,
34796048-34796122,34796316-34796401,34796529-34796578,
34796667-34796707,34796784-34796948,34797204-34797271,
34797362-34797422,34797878-34798393
Length = 596
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 199 TIDELRNVFHVEHHSRVPEYHLVQ-LTHHLARRNIPTSHPANSNSAD 336
T +E+ ++H HL++ + HH ARRN+ + N + A+
Sbjct: 106 TREEVEESIKIKHAVSSARKHLIEVILHHAARRNLKARYHHNQSCAE 152
>03_05_0944 +
29046793-29046922,29048091-29048464,29048556-29048687,
29048829-29049210,29049370-29049513,29049593-29049777,
29049925-29050051,29050603-29050676,29051071-29051147,
29051256-29051292,29051453-29051619,29051800-29051983,
29052053-29052130,29052451-29052570,29052648-29052707,
29053057-29053179,29053848-29053941,29054019-29054197,
29054737-29055039,29055373-29055474,29055553-29055693,
29055831-29055995,29056168-29056344,29056432-29056554,
29057787-29057867,29057983-29058099,29058214-29058386,
29058846-29058923,29058994-29059141,29059755-29059877,
29060015-29060071,29060145-29060255,29060382-29060573,
29060690-29060863,29061263-29061373,29061462-29061531,
29061734-29061812,29061898-29062000,29062086-29062256,
29062348-29062470,29062548-29062661,29062935-29063041,
29063117-29063168,29063245-29063351,29063589-29063703,
29063819-29063929,29064016-29064153,29064230-29064352,
29064535-29064606,29064774-29064886,29066780-29067110,
29067199-29067381,29068669-29068863,29068943-29069110,
29069208-29069340,29069511-29069595,29069726-29069765
Length = 2591
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 151 SFITTQSLNNKIHEH-MTIDELRNVFHVEHHSRVPEYHLVQ 270
S ++ Q + E +TI +L VEHHSRV E+ VQ
Sbjct: 510 SLVSVQLFSKLTDEDCLTIMDLLQSLFVEHHSRVQEFFSVQ 550
>02_01_0570 -
4195409-4195443,4196245-4196333,4196539-4196630,
4196726-4196833,4196984-4197118,4197211-4197256,
4197358-4197458,4198285-4198422,4198503-4198601,
4198740-4198856,4199195-4199356,4199734-4199793,
4200371-4200538,4200608-4200718,4201401-4201499,
4201579-4201644,4202407-4202490,4202563-4202605,
4202684-4202739,4202817-4202925,4203442-4203524,
4203842-4203925,4204311-4204382,4204462-4204539,
4204633-4204716,4204806-4204876,4205943-4206012,
4206495-4206626,4207168-4207284,4208185-4208367
Length = 963
Score = 27.9 bits (59), Expect = 4.8
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = +1
Query: 16 AEECYKSVLFYVSAPGPPLKRY*HTRTIMESSVATHWLSAFVILCSFITTQSLNNKIHEH 195
AEE KS + +VS KR + +S + HW A I+ + T N I
Sbjct: 450 AEEKSKSSIIHVSPFNSEKKRAGVAVIVDDSDIHVHWKGAAEIVLALCTNWLDVNGISHE 509
Query: 196 MTIDE 210
MT D+
Sbjct: 510 MTPDK 514
>09_02_0022 +
3065644-3065953,3066048-3067162,3067261-3067437,
3067535-3067648,3068614-3068718,3068930-3069064,
3069148-3069203,3069277-3069382,3069515-3069631,
3069705-3069831,3069915-3070141,3070164-3070727
Length = 1050
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 399 RGGLVPTFSDFFGF*MGGLS*IGAV 325
RG VP+ +D+FGF M L+ G+V
Sbjct: 483 RGPRVPSMTDYFGFTMAALNESGSV 507
>03_05_0936 -
28955486-28955683,28956320-28956424,28956550-28956693,
28957078-28957356,28957480-28957587,28958288-28958567,
28958724-28960029,28961301-28962342
Length = 1153
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 175 NNKIHEHMTIDELRNVFHVEHHSRVPEYHLVQL 273
NNK ++DE++ + +V H +YHL++L
Sbjct: 837 NNKDFFDQSLDEIKLLKYVNKHDPADKYHLLRL 869
>01_01_1215 +
9815918-9816218,9816772-9816912,9816988-9817106,
9817922-9818191,9818330-9818369,9818519-9818616,
9818745-9818825
Length = 349
Score = 27.5 bits (58), Expect = 6.4
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = -3
Query: 263 RWYSGTLLWCSTWKTFRSSSIVMCSWILLLSDC----VVMNEQSITNAESQCVATEDSMI 96
R Y G LL CS + +SI CS LL+S C +++ + + ++ S V TE +
Sbjct: 242 RSYEGGLLMCSRGEISNRASIFECS-ELLVSSCEITMILLLKHTQSSHNSYSVNTEMMLY 300
Query: 95 VLVC 84
+C
Sbjct: 301 ASLC 304
>10_01_0145 -
1708597-1708824,1710225-1710468,1711217-1711263,
1711767-1711857,1712982-1713094,1713387-1713462,
1713501-1713560,1713759-1713835,1714105-1714672,
1715332-1715509,1715632-1715774,1717255-1717424,
1717588-1717822,1718565-1718779
Length = 814
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 359 KPKKSLKVGTRPPLCSMTRCLSKQRSVSKM 448
KP +KV + PP+ +M + L+ Q ++SK+
Sbjct: 686 KPMTEVKVTSPPPMNTMEQLLAVQNAISKV 715
>02_02_0592 -
11934238-11934249,11934755-11934835,11935166-11935324,
11936362-11936442,11936523-11936591,11937147-11937260,
11937805-11937858,11938788-11938915,11940527-11940782
Length = 317
Score = 27.1 bits (57), Expect = 8.5
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = +1
Query: 100 MESSVATHWLSAFVILCSFITTQSLNNKIHEHMTIDE 210
ME +A W+ + +F+ T+ + +K+H+ + E
Sbjct: 185 MEGVIAEQWIQIRQLEQAFVLTKMMTSKVHQRSRLSE 221
>02_01_0369 +
2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 226 HVEHHSRVPEYHLVQLTHHLARRNIPTS 309
H+E H+R E + QLT L NI TS
Sbjct: 642 HLESHARDMETYFGQLTEQLIEENIYTS 669
>01_02_0106 -
11175200-11175385,11175463-11175496,11175987-11176247,
11176501-11176831,11176899-11177589,11177611-11178156,
11178441-11178680
Length = 762
Score = 27.1 bits (57), Expect = 8.5
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +3
Query: 60 RSAFKTILTHEDNHGVFRGDALALCVRDTLLIHHDTIAQQQDPRAHDNR*ASERLPCR 233
R A+K L ++ G F+G + CV+ LL +T + D D E PCR
Sbjct: 277 REAYKDKL-RDEGAGEFKGQMMDFCVKHMLLPRPETKEPEPDYPFDD---LKENTPCR 330
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,165,495
Number of Sequences: 37544
Number of extensions: 337412
Number of successful extensions: 992
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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