Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0488
(502 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1289| Best HMM Match : Ribosomal_L27 (HMM E-Value=7.3) 34 0.057
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.23
SB_6176| Best HMM Match : Bromo_TP (HMM E-Value=1.5e-23) 31 0.40
SB_29231| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_45626| Best HMM Match : Equine_IAV_S2 (HMM E-Value=6.6) 28 3.8
SB_15864| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_51687| Best HMM Match : EMP70 (HMM E-Value=0) 28 3.8
SB_57137| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_53509| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_49370| Best HMM Match : rve (HMM E-Value=0.0062) 27 6.6
SB_40863| Best HMM Match : RVT_1 (HMM E-Value=0.00014) 27 6.6
SB_32893| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037) 27 6.6
SB_19591| Best HMM Match : rve (HMM E-Value=0.00025) 27 6.6
SB_11707| Best HMM Match : rve (HMM E-Value=0.00025) 27 6.6
SB_10513| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_4858| Best HMM Match : RnaseH (HMM E-Value=1.1) 27 6.6
SB_59606| Best HMM Match : rve (HMM E-Value=0.00032) 27 6.6
SB_41895| Best HMM Match : rve (HMM E-Value=0.00076) 27 6.6
SB_38271| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_36449| Best HMM Match : RnaseH (HMM E-Value=0.92) 27 6.6
SB_15193| Best HMM Match : rve (HMM E-Value=0.00021) 27 6.6
SB_7375| Best HMM Match : RVT_1 (HMM E-Value=7.6e-19) 27 8.7
>SB_1289| Best HMM Match : Ribosomal_L27 (HMM E-Value=7.3)
Length = 405
Score = 34.3 bits (75), Expect = 0.057
Identities = 29/92 (31%), Positives = 42/92 (45%)
Frame = +3
Query: 30 QKCLILRQCTRSAFKTILTHEDNHGVFRGDALALCVRDTLLIHHDTIAQQQDPRAHDNR* 209
Q LI+R+C S ++L + H R + LCV+ L I +Q D R + N
Sbjct: 169 QFILIVRECVTSYTTSLLLTNEQHSTLRDALIRLCVQMRPLDDQTLIEKQHDQR-NSNHA 227
Query: 210 ASERLPCRAPQQSTRVPPGSAHTSLGQKEYTH 305
SE+ +AP R P +A T +G Y H
Sbjct: 228 YSEK--SKAPTADFR--PSTAIT-VGDLIYLH 254
>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4924
Score = 32.3 bits (70), Expect = 0.23
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 127 LSAFVILCSFITTQSLNNKIHEHMTIDELRNVFHVEHHSRVPEYHL 264
L+ F SF + + +H HM+ +L VF V+ H VPEY +
Sbjct: 525 LATFSGKSSFACIKFHPSSVHRHMSKRDLAAVFGVDSHDDVPEYDI 570
>SB_6176| Best HMM Match : Bromo_TP (HMM E-Value=1.5e-23)
Length = 684
Score = 31.5 bits (68), Expect = 0.40
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = +1
Query: 250 PEYHLVQLTHHLAR---RNIPTSHPANSNSADSGKTPHLKTEKVTKGGYKAPSLLNDEMF 420
PEY + Q+ HLA + HP++ G+ K +K + G P L DE+
Sbjct: 415 PEYSVAQMVSHLAEPEEKKKAKKHPSDHAGPALGEPKKKKKKK--EPGPSNP--LGDEVI 470
Query: 421 VEAKKRIEDVDIMGDPNSTVSVD 489
+ KK+ +D D D + T V+
Sbjct: 471 KKKKKKHKDKDKTKDKHKTKKVE 493
>SB_29231| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2271
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +3
Query: 30 QKCLILRQCTRSAFKTILTHEDNHGVFRGDALALCVR----DTLLIHH 161
Q LI+R+C S ++L + H R + LCV+ D L HH
Sbjct: 223 QFILIVRECVTSYTTSLLLTNEQHSTLRDALIRLCVQMRPLDDLAKHH 270
>SB_45626| Best HMM Match : Equine_IAV_S2 (HMM E-Value=6.6)
Length = 315
Score = 28.3 bits (60), Expect = 3.8
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Frame = +1
Query: 244 RVPEYHLVQLTHHL---ARRNIP---TSHPANSNSADSGKTPHLKTEKVTKGGYKAPS 399
++PE L+ L+ ++R+ P T HP N+ K EK +KGG+++PS
Sbjct: 4 QLPETDLIDLSDDKDADSQRSSPVILTKHPNKHNTGKGRKGEEKVQEKGSKGGHESPS 61
>SB_15864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 272
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 231 RAPQQSTRVPPGSAHTSLGQKEYTHF-SPSELEQRRFRKDPPFKNRKS 371
R P+ ++R P ++ TS G+ E+ + + +LE R D P N K+
Sbjct: 199 RTPEWTSRTPEWTSRTSNGKPEHPNVRAEHQLENPNTRMDIPITNWKT 246
>SB_51687| Best HMM Match : EMP70 (HMM E-Value=0)
Length = 392
Score = 28.3 bits (60), Expect = 3.8
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = -3
Query: 254 SGTLLWCSTWKTFRSSSIVMCSWILLLSDCVVM 156
S ++W S W T+ + S V W +++ V++
Sbjct: 115 SSDIVWASRWDTYLAMSDVQIHWFAIVNSVVIV 147
>SB_57137| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -1
Query: 289 WPSDV*AEPGGTLVLCCGARHGRRSEAHLLSCARGSC 179
WPS V PGG+LV+ R GR L+ +RG C
Sbjct: 352 WPSRV---PGGSLVVRVPGRLGRLPAGGLVEESRGVC 385
>SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1505
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 30 QKCLILRQCTRSAFKTILTHEDNHGVFRGDALALCVR 140
Q LI+R+C S ++L + H R + LCV+
Sbjct: 1163 QFILIVRECVTSYTTSLLLTNEQHSTLRDALIRLCVQ 1199
>SB_53509| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 30 QKCLILRQCTRSAFKTILTHEDNHGVFRGDALALCVR 140
Q LI+R+C S ++L + H R + LCV+
Sbjct: 133 QFILIVRECVTSYTTSLLLTNEQHSTLRDALIRLCVQ 169
>SB_49370| Best HMM Match : rve (HMM E-Value=0.0062)
Length = 192
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 30 QKCLILRQCTRSAFKTILTHEDNHGVFRGDALALCVR 140
Q LI+R+C S ++L + H R + LCV+
Sbjct: 9 QFILIVRECVTSYTTSLLLTNEQHSTLRDALIRLCVQ 45
>SB_40863| Best HMM Match : RVT_1 (HMM E-Value=0.00014)
Length = 1236
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 30 QKCLILRQCTRSAFKTILTHEDNHGVFRGDALALCVR 140
Q LI+R+C S ++L + H R + LCV+
Sbjct: 915 QFILIVRECVTSYTTSLLLTNEQHSTLRDALIRLCVQ 951
>SB_32893| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 287
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 30 QKCLILRQCTRSAFKTILTHEDNHGVFRGDALALCVR 140
Q LI+R+C S ++L + H R + LCV+
Sbjct: 245 QFILIVRECVTSYTTSLLLTNEQHSTLRDALIRLCVQ 281
>SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037)
Length = 1283
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 30 QKCLILRQCTRSAFKTILTHEDNHGVFRGDALALCVR 140
Q LI+R+C S ++L + H R + LCV+
Sbjct: 1128 QFILIVRECVTSYTTSLLLTNEQHSTLRDALIRLCVQ 1164
>SB_19591| Best HMM Match : rve (HMM E-Value=0.00025)
Length = 245
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 30 QKCLILRQCTRSAFKTILTHEDNHGVFRGDALALCVR 140
Q LI+R+C S ++L + H R + LCV+
Sbjct: 62 QFILIVRECVTSYTTSLLLTNEQHSTLRDALIRLCVQ 98
>SB_11707| Best HMM Match : rve (HMM E-Value=0.00025)
Length = 353
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 30 QKCLILRQCTRSAFKTILTHEDNHGVFRGDALALCVR 140
Q LI+R+C S ++L + H R + LCV+
Sbjct: 62 QFILIVRECVTSYTTSLLLTNEQHSTLRDALIRLCVQ 98
>SB_10513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 366
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 30 QKCLILRQCTRSAFKTILTHEDNHGVFRGDALALCVR 140
Q LI+R+C S ++L + H R + LCV+
Sbjct: 240 QFILIVRECVTSYTTSLLLTNEQHSTLRDALIRLCVQ 276
>SB_4858| Best HMM Match : RnaseH (HMM E-Value=1.1)
Length = 512
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 30 QKCLILRQCTRSAFKTILTHEDNHGVFRGDALALCVR 140
Q LI+R+C S ++L + H R + LCV+
Sbjct: 344 QFILIVRECVTSYTTSLLLTNEQHSTLRDALIRLCVQ 380
>SB_59606| Best HMM Match : rve (HMM E-Value=0.00032)
Length = 404
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 30 QKCLILRQCTRSAFKTILTHEDNHGVFRGDALALCVR 140
Q LI+R+C S ++L + H R + LCV+
Sbjct: 62 QFILIVRECVTSYTTSLLLTNEQHSTLRDALIRLCVQ 98
>SB_41895| Best HMM Match : rve (HMM E-Value=0.00076)
Length = 655
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 30 QKCLILRQCTRSAFKTILTHEDNHGVFRGDALALCVR 140
Q LI+R+C S ++L + H R + LCV+
Sbjct: 245 QFILIVRECVTSYTTSLLLTNEQHSTLRDALIRLCVQ 281
>SB_38271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 30 QKCLILRQCTRSAFKTILTHEDNHGVFRGDALALCVR 140
Q LI+R+C S ++L + H R + LCV+
Sbjct: 250 QFILIVRECVTSYTTSLLLTNEQHSTLRDALIRLCVQ 286
>SB_36449| Best HMM Match : RnaseH (HMM E-Value=0.92)
Length = 655
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 30 QKCLILRQCTRSAFKTILTHEDNHGVFRGDALALCVR 140
Q LI+R+C S ++L + H R + LCV+
Sbjct: 561 QFILIVRECVTSYTTSLLLTNEQHSTLRDALIRLCVQ 597
>SB_15193| Best HMM Match : rve (HMM E-Value=0.00021)
Length = 544
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 30 QKCLILRQCTRSAFKTILTHEDNHGVFRGDALALCVR 140
Q LI+R+C S ++L + H R + LCV+
Sbjct: 315 QFILIVRECVTSYTTSLLLTNEQHSTLRDALIRLCVQ 351
>SB_7375| Best HMM Match : RVT_1 (HMM E-Value=7.6e-19)
Length = 544
Score = 27.1 bits (57), Expect = 8.7
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = +1
Query: 229 VEHHSRVPEYHLVQLTHHLARRNIPTSHPAN 321
++ H++ + H+V++ L + NIP +H A+
Sbjct: 40 LQEHTKKCDMHMVKMQQALVKGNIPVAHVAD 70
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,213,794
Number of Sequences: 59808
Number of extensions: 378627
Number of successful extensions: 1174
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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