Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0488
(502 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 41 4e-04
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 41 4e-04
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 41 4e-04
Z50006-5|CAA90300.1| 301|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z35640-6|CAA84702.2| 1226|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z35639-9|CAA84700.2| 1226|Caenorhabditis elegans Hypothetical pr... 29 2.5
U41551-2|AAK71399.1| 184|Caenorhabditis elegans Hypothetical pr... 28 3.3
U41551-1|AAK71398.1| 177|Caenorhabditis elegans Hypothetical pr... 28 3.3
AC024826-5|AAF60800.1| 152|Caenorhabditis elegans Hypothetical ... 28 3.3
U41038-1|AAK29709.2| 683|Caenorhabditis elegans Serotonin/octop... 28 4.4
AF031414-1|AAC15827.1| 683|Caenorhabditis elegans serotonin rec... 28 4.4
Z67755-3|CAA91756.1| 189|Caenorhabditis elegans Hypothetical pr... 27 7.6
U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily ass... 27 7.6
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 41.1 bits (92), Expect = 4e-04
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +1
Query: 136 FVILCSFI--TTQSLNNKIHEHMTIDELRNVFHVEHHSRVPEYHLVQLTHH 282
F I+ +F+ T ++ +H H+ +EL+ VF V + VPEY L++ T H
Sbjct: 4 FYIVITFLLSTVFRISQSVHHHLNEEELKQVFGVSNKHDVPEYSLIEATRH 54
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 41.1 bits (92), Expect = 4e-04
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +1
Query: 136 FVILCSFI--TTQSLNNKIHEHMTIDELRNVFHVEHHSRVPEYHLVQLTHH 282
F I+ +F+ T ++ +H H+ +EL+ VF V + VPEY L++ T H
Sbjct: 4 FYIVITFLLSTVFRISQSVHHHLNEEELKQVFGVSNKHDVPEYSLIEATRH 54
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 41.1 bits (92), Expect = 4e-04
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +1
Query: 136 FVILCSFI--TTQSLNNKIHEHMTIDELRNVFHVEHHSRVPEYHLVQLTHH 282
F I+ +F+ T ++ +H H+ +EL+ VF V + VPEY L++ T H
Sbjct: 4 FYIVITFLLSTVFRISQSVHHHLNEEELKQVFGVSNKHDVPEYSLIEATRH 54
>Z50006-5|CAA90300.1| 301|Caenorhabditis elegans Hypothetical
protein T07C5.4 protein.
Length = 301
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 85 HTRTIMESSVATHWLSAFVILCSFITTQSLNNKIHEH 195
+T +++E TH AF I C F+ +L K+HEH
Sbjct: 242 YTSSLLELCFKTHKKKAFTI-CRFLCVFNLVMKVHEH 277
>Z35640-6|CAA84702.2| 1226|Caenorhabditis elegans Hypothetical
protein F43D9.1 protein.
Length = 1226
Score = 28.7 bits (61), Expect = 2.5
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +3
Query: 162 DTIAQQQDPRAHDNR*ASERLPCRAP-QQSTRVPP-GSAHTSLGQKEYTHFSPSELEQRR 335
++ A +++PRA N S AP ++ TRV QKE ELE++R
Sbjct: 45 ESSADEEEPRASSNNNYSSTSTVAAPTREPTRVSTLKREEKEKKQKERMERERRELEEKR 104
Query: 336 FRKDPPFKNRKSH 374
++D K +H
Sbjct: 105 VQEDEMKKEEHNH 117
>Z35639-9|CAA84700.2| 1226|Caenorhabditis elegans Hypothetical
protein F43D9.1 protein.
Length = 1226
Score = 28.7 bits (61), Expect = 2.5
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +3
Query: 162 DTIAQQQDPRAHDNR*ASERLPCRAP-QQSTRVPP-GSAHTSLGQKEYTHFSPSELEQRR 335
++ A +++PRA N S AP ++ TRV QKE ELE++R
Sbjct: 45 ESSADEEEPRASSNNNYSSTSTVAAPTREPTRVSTLKREEKEKKQKERMERERRELEEKR 104
Query: 336 FRKDPPFKNRKSH 374
++D K +H
Sbjct: 105 VQEDEMKKEEHNH 117
>U41551-2|AAK71399.1| 184|Caenorhabditis elegans Hypothetical
protein T06F4.1b protein.
Length = 184
Score = 28.3 bits (60), Expect = 3.3
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Frame = +1
Query: 154 FITTQSLNNKIHEHMTIDELRNVFHVEHHSRVPEYHLVQLTH-HLARRNIPTSHPANSNS 330
F TQ+ N+++ + D + HH + H H+ + N S
Sbjct: 94 FNNTQTTNDEMLTTVRSDANSSYMGRNHHRSHQNTAPTFMRHGHMNHQQTTRLVADNDGS 153
Query: 331 ADSGKTPHLKTEKVTKGGYKAPSLLNDEM 417
A + PH+ TE T K P L+ D +
Sbjct: 154 AVKHQIPHITTEAPTDEKAKVPQLVKDSI 182
>U41551-1|AAK71398.1| 177|Caenorhabditis elegans Hypothetical
protein T06F4.1a protein.
Length = 177
Score = 28.3 bits (60), Expect = 3.3
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Frame = +1
Query: 154 FITTQSLNNKIHEHMTIDELRNVFHVEHHSRVPEYHLVQLTH-HLARRNIPTSHPANSNS 330
F TQ+ N+++ + D + HH + H H+ + N S
Sbjct: 87 FNNTQTTNDEMLTTVRSDANSSYMGRNHHRSHQNTAPTFMRHGHMNHQQTTRLVADNDGS 146
Query: 331 ADSGKTPHLKTEKVTKGGYKAPSLLNDEM 417
A + PH+ TE T K P L+ D +
Sbjct: 147 AVKHQIPHITTEAPTDEKAKVPQLVKDSI 175
>AC024826-5|AAF60800.1| 152|Caenorhabditis elegans Hypothetical
protein Y55F3AM.8 protein.
Length = 152
Score = 28.3 bits (60), Expect = 3.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 263 RWYSGTLLWCSTWKTFRSS 207
RWY ++W STW ++ S
Sbjct: 45 RWYKRDIVWLSTWNLYKCS 63
>U41038-1|AAK29709.2| 683|Caenorhabditis elegans
Serotonin/octopamine receptor familyprotein 1, isoform a
protein.
Length = 683
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 262 LVQLTHHLARRNIPTSHPANSNSADSGKTPHLKTEKV 372
L++L H A P PAN + A + TPH T V
Sbjct: 2 LIELFSHSAPPEDPYYVPANESFATTALTPHFSTTSV 38
>AF031414-1|AAC15827.1| 683|Caenorhabditis elegans serotonin
receptor protein.
Length = 683
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 262 LVQLTHHLARRNIPTSHPANSNSADSGKTPHLKTEKV 372
L++L H A P PAN + A + TPH T V
Sbjct: 2 LIELFSHSAPPEDPYYVPANESFATTALTPHFSTTSV 38
>Z67755-3|CAA91756.1| 189|Caenorhabditis elegans Hypothetical
protein F54F7.3 protein.
Length = 189
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 310 HPANSNSADSGKTPHLKTEKVTKGGYKAPSLLND 411
HP N+ + L E K GY+A S+LND
Sbjct: 123 HPKNNAIENCSTEDQLFKEFAAKAGYRAISVLND 156
>U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily
assigned gene nameprotein 158 protein.
Length = 1003
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -2
Query: 300 YIPSGQVMCELNQVVLWYSAVVLDMEDVPKLI-YCHVLVDLVVERLC 163
Y SGQ +C N +L SAV+ + + ++ YC++ + +R+C
Sbjct: 219 YPDSGQYVCMYNDRLLQSSAVLNESIPLDEICNYCNINNTFLADRVC 265
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,522,278
Number of Sequences: 27780
Number of extensions: 277057
Number of successful extensions: 830
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -