Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0488
         (502 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    27   0.15 
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    25   0.59 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   1.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   4.1  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   4.1  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   5.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   5.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   5.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.2  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   9.5  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   9.5  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   9.5  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +1

Query: 118 THWLSAFVILCSFITTQSLNNKIHEHMTIDELRNVFHVEHHSRVPEY 258
           T+WL   +I+C  I  Q + + IH+  +   L +  +V H  +  +Y
Sbjct: 2   TNWL--LLIVCLSIACQDVTSAIHQRKSSKNLEHSMNVIHEWKYIDY 46


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 24.6 bits (51), Expect = 0.59
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 256 YHLVQLTHHLARRNIPT 306
           YH+ QL HHL+  N+PT
Sbjct: 5   YHVAQLPHHLS-PNMPT 20


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 302 PLLTQRTRTAPIQERPPI*KPKKSLKVGTRPPLCSMTRC 418
           P+ T+R  T   +ER P   PK+  K+ + P L     C
Sbjct: 622 PVTTKRDGTQETEERLPPLPPKRIRKMPSMPLLPRPISC 660


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +3

Query: 336 FRKDPPFKNRKSH*RWVQGPLFAQ 407
           F   PP      +  WV GPLF Q
Sbjct: 103 FCMSPPMVINCYYETWVLGPLFCQ 126


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +3

Query: 336 FRKDPPFKNRKSH*RWVQGPLFAQ 407
           F   PP      +  WV GPLF Q
Sbjct: 69  FCMSPPMVINCYYETWVLGPLFCQ 92


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -2

Query: 150 AEYHERREPVRRHGRLHDCP 91
           AEY ERRE    HG     P
Sbjct: 10  AEYIERREREAEHGYASTMP 29


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 163 TQSLNNKIHEHMTIDELRN-VFHVEHHSR 246
           ++ +N+K  E+  +D LRN +F  E+  +
Sbjct: 85  SKEVNDKKEENFIVDRLRNDLFECENKEK 113


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 485 TLTVLLGSPMISTSSIRFFASTNISSLSKEGALYPP 378
           TL   + SP+ S SS     S  ++SL++   + PP
Sbjct: 481 TLDEAVKSPLGSVSSTESTCSGEVASLTEYHHVAPP 516


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 298  IPTSHPANSNSADSGKTPHLK 360
            + +S   +SN  D+GK  H++
Sbjct: 1792 LTSSRTESSNQLDAGKLKHIR 1812


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 298  IPTSHPANSNSADSGKTPHLK 360
            + +S   +SN  D+GK  H++
Sbjct: 1788 LTSSRTESSNQLDAGKLKHIR 1808


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 304 TSHPANSNSADSGKTPHLKTEKVTKGGYKAPSLLNDE 414
           T H    ++ +S  +     E+ T   +  PSL++DE
Sbjct: 242 TRHREADDAEESVSSETNHNERSTPRSHAKPSLIDDE 278


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 304 TSHPANSNSADSGKTPHLKTEKVTKGGYKAPSLLNDE 414
           T H    ++ +S  +     E+ T   +  PSL++DE
Sbjct: 242 TRHREADDAEESVSSETNHNERSTPRSHAKPSLIDDE 278


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 304 TSHPANSNSADSGKTPHLKTEKVTKGGYKAPSLLNDE 414
           T H    ++ +S  +     E+ T   +  PSL++DE
Sbjct: 242 TRHREADDAEESVSSETNHNERSTPRSHAKPSLIDDE 278


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,594
Number of Sequences: 438
Number of extensions: 3208
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)