Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0488
(502 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g01810.1 68416.m00123 expressed protein 30 0.76
At1g74070.1 68414.m08579 peptidyl-prolyl cis-trans isomerase cyc... 30 1.0
At5g55900.1 68418.m06970 sucrase-related similar to sucrase [Sol... 29 2.3
At4g02725.1 68417.m00370 expressed protein 29 2.3
At3g19800.1 68416.m02508 expressed protein 28 3.1
At5g48410.1 68418.m05986 glutamate receptor family protein (GLR1... 28 4.1
At3g17750.1 68416.m02265 protein kinase family protein contains ... 28 4.1
At1g73460.1 68414.m08504 protein kinase family protein contains ... 27 5.4
At1g73450.1 68414.m08503 protein kinase, putative similar to nuc... 27 5.4
At1g05700.1 68414.m00591 leucine-rich repeat protein kinase, put... 27 5.4
At3g54810.2 68416.m06066 zinc finger (GATA type) family protein ... 27 7.1
At3g54810.1 68416.m06065 zinc finger (GATA type) family protein ... 27 7.1
At3g14270.1 68416.m01806 phosphatidylinositol-4-phosphate 5-kina... 27 7.1
At5g55020.1 68418.m06853 myb family transcription factor (MYB120... 27 9.4
At5g37050.1 68418.m04444 hypothetical protein hypothetical prote... 27 9.4
At3g49070.1 68416.m05361 expressed protein similar to At14a (GI:... 27 9.4
At2g40120.1 68415.m04934 protein kinase family protein contains ... 27 9.4
>At3g01810.1 68416.m00123 expressed protein
Length = 921
Score = 30.3 bits (65), Expect = 0.76
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 304 TSHPANSNSADSGKTPHLKTEKVTKGGYKAPSLLNDEMFVEAK-KRIEDVDIMGDPNSTV 480
T P + A S LK E GG +L+N+E + EA+ I D DI + TV
Sbjct: 158 TIQPVSRRRASSSSMNSLKDE-AKNGGESVSALMNEEYYKEAEIASITDDDISSHSSLTV 216
Query: 481 S 483
S
Sbjct: 217 S 217
>At1g74070.1 68414.m08579 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 317
Score = 29.9 bits (64), Expect = 1.0
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +1
Query: 283 LARRNIPTSHPANSNSADSGKTPHLKTEKVTKGGYKAPSLLNDEMFVEAKKRIEDVDIMG 462
L+RRN+ S + + TP L K P+L N E + KK DV I G
Sbjct: 43 LSRRNLSKSSLLLLLTTQTTLTPLLDFSKAQADTIANPNLTNCENRIPTKKAFIDVSIDG 102
Query: 463 DP 468
+P
Sbjct: 103 EP 104
>At5g55900.1 68418.m06970 sucrase-related similar to sucrase
[Solanum tuberosum] GI:1200257
Length = 413
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2
Query: 252 WYSAVVLDMEDVPKLIYCHVLVDLVVERLCRDE 154
WY V L EDVP L+ H+ +V+RL R E
Sbjct: 245 WYGCVTL--EDVPLLLEQHINKGEIVDRLWRGE 275
>At4g02725.1 68417.m00370 expressed protein
Length = 165
Score = 28.7 bits (61), Expect = 2.3
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -3
Query: 239 WCSTWKTFRSS-SIVMCSWILLLS 171
WC W + SIV CSW++L S
Sbjct: 91 WCQPWTIMLTGLSIVACSWVILHS 114
>At3g19800.1 68416.m02508 expressed protein
Length = 229
Score = 28.3 bits (60), Expect = 3.1
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Frame = +1
Query: 274 THHLARRNIPTSHPANS------NSADSGKT-PHLKTEKVTKGGYKAPSLLNDEMFVEAK 432
THHL ++ H A+S N S KT L T ++G + ++ +
Sbjct: 22 THHLPFSSLSKKHQASSPIQAAINGGGSSKTVKRLITLSPSEGKWNGNWKTQYDVSLR-D 80
Query: 433 KRIEDVDIMGDPNSTVSVDFKVQ 501
+++D+ G PNS VSVD VQ
Sbjct: 81 LQLQDLVEDGPPNSRVSVDLSVQ 103
>At5g48410.1 68418.m05986 glutamate receptor family protein (GLR1.3)
plant glutamate receptor family, PMID:11379626
Length = 860
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -1
Query: 361 FLNG-GSFLNRRCSSSLGEKWVYSFWPSDV*AEPGGTLVL 245
FLN GSF NRR SS K WP P GT ++
Sbjct: 394 FLNSNGSFSNRRHLSSTHNKLETIIWPGGSAQSPKGTSLI 433
>At3g17750.1 68416.m02265 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 1138
Score = 27.9 bits (59), Expect = 4.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 175 NNKIHEHMTIDELRNVFHVEHHSRVPEYHLVQL 273
NNK ++DE++ + +V H +YHL++L
Sbjct: 860 NNKDFFDQSLDEIKLLKYVNQHDPADKYHLLRL 892
>At1g73460.1 68414.m08504 protein kinase family protein contains
protein kinase domain Pfam:PF00069
Length = 1169
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 175 NNKIHEHMTIDELRNVFHVEHHSRVPEYHLVQL 273
NNK ++DE++ + +V H +YHL++L
Sbjct: 891 NNKDFFDQSLDEIKLLKYVNKHDPADKYHLLRL 923
>At1g73450.1 68414.m08503 protein kinase, putative similar to
nuclear serine/threonine protein kinase GI:3582644 from
[Rattus norvegicus]
Length = 1152
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 175 NNKIHEHMTIDELRNVFHVEHHSRVPEYHLVQL 273
NNK ++DE++ + +V H +YHL++L
Sbjct: 874 NNKDFFDQSLDEIKLLKYVNKHDPADKYHLLRL 906
>At1g05700.1 68414.m00591 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase, gi|2129635; contains leucine rich repeat (LRR)
domains, Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 843
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 467 GSPMISTSSIRFFASTNISSLSKEGALY 384
G+P IST +RF + N + S GAL+
Sbjct: 166 GTPFISTLELRFLGNDNTTYDSPNGALF 193
>At3g54810.2 68416.m06066 zinc finger (GATA type) family protein
GATA transcription factor 3, Arabidopsis thaliana,
Y13650
Length = 322
Score = 27.1 bits (57), Expect = 7.1
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +2
Query: 257 TTWFSSHITWPEGIYPLLTQRTRTAPIQERPPI*KPKKSLKVGTRPP 397
T W + H TWP PL + T + P + P + + RPP
Sbjct: 44 TIWTTHHDTWPAASDPLFSSNTNS---DSSPELYVPFEDIVKVERPP 87
>At3g54810.1 68416.m06065 zinc finger (GATA type) family protein
GATA transcription factor 3, Arabidopsis thaliana,
Y13650
Length = 322
Score = 27.1 bits (57), Expect = 7.1
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +2
Query: 257 TTWFSSHITWPEGIYPLLTQRTRTAPIQERPPI*KPKKSLKVGTRPP 397
T W + H TWP PL + T + P + P + + RPP
Sbjct: 44 TIWTTHHDTWPAASDPLFSSNTNS---DSSPELYVPFEDIVKVERPP 87
>At3g14270.1 68416.m01806 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to SP|Q9Z1T6 FYVE
finger-containing phosphoinositide kinase (EC 2.7.1.68)
(1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
(PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF01363: FYVE zinc finger, PF00118:
TCP-1/cpn60 chaperonin family
Length = 1791
Score = 27.1 bits (57), Expect = 7.1
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +1
Query: 205 DELRNVFHVEHHSRVPEYHLVQLTHHLARRNIPTSHPANS 324
DEL+ V HV + YHL T LA P NS
Sbjct: 628 DELKKVKHVVQYGVFAAYHLALETSFLADEGASPELPLNS 667
>At5g55020.1 68418.m06853 myb family transcription factor (MYB120)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 523
Score = 26.6 bits (56), Expect = 9.4
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 175 NNKIHEHMTIDELRNVFHVEHHSRVPEYHL-VQLTHHLARRNIPTSHPANSNSADSGKT 348
N+++H H + + H HH + + H + ++RN P+S P S + + K+
Sbjct: 144 NHQLHPHPHHQQQQQHNHHHHHHQQQQQHQQMYFQPQSSQRNTPSSSPLPSPTPANAKS 202
>At5g37050.1 68418.m04444 hypothetical protein hypothetical protein
T28J14.60 - Arabidopsis thaliana, PIR:T48483
Length = 165
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 494 LKSTLTVLLGSPMISTSSIRFFASTNISS 408
L TL G P+ S+S R A+TN+S+
Sbjct: 28 LSRTLRTSAGPPVASSSLFRMLATTNVST 56
>At3g49070.1 68416.m05361 expressed protein similar to At14a
(GI:11994571 and GI:11994573) [Arabidopsis thaliana]
Length = 416
Score = 26.6 bits (56), Expect = 9.4
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +1
Query: 85 HTRTIMESSVATHWLSAFVILCSFITTQSLNNKIHEHMTIDELRNVFHVEHHS 243
HTRT++ S +AF +LC TQ L N H + L+ FH E+H+
Sbjct: 149 HTRTLL-SDYFLETANAF-LLC----TQLLKNIHHLRSKYESLKPKFHSENHN 195
>At2g40120.1 68415.m04934 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 570
Score = 26.6 bits (56), Expect = 9.4
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 175 NNKIHEHMTIDELRNVFHVEHHSRVPEYHLVQL 273
N+K ++DE++ + HV H E+H+++L
Sbjct: 294 NDKDFFDQSLDEIKLLKHVNKHDPADEHHILRL 326
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,857,253
Number of Sequences: 28952
Number of extensions: 261183
Number of successful extensions: 860
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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