Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0487
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   3.5  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    26   6.1  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    26   6.1  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    26   6.1  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.1  

>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 319 FPSFSESRTAIHFYIYRLMQCYFIAWQIFILSVTYYFLILDMPSV 453
           + SF ESRT +HF     +  +   W I  +SV +YF + + P++
Sbjct: 408 YKSFRESRTWLHF-----LHNFSRIW-ILHISVFWYFTVYNSPTI 446


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 346 AIHFYIYRLMQCYFIAWQIFILSVTYYFLILD 441
           A  FY  RLM+   + W+  + ++ +YF I D
Sbjct: 681 ADQFYNERLMRSAMVFWRYQLRAIKFYFNISD 712


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 292 PKLAKSVQPFPSFSESRTAIHFYIYRL-MQCYFIAWQIFILSVTYYFLILDMPSVCVSKS 468
           PK +K +QP P     +  + F+I R+ + C + + ++    +  + L+ D     +SKS
Sbjct: 502 PK-SKDIQPLPFIESGQDILFFWIARMALLCKYFSNELPFKEIILHPLVRDSEGRKMSKS 560


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +1

Query: 301 AKSVQPFPSFSESRTAIHFYIYRLMQCYFIAWQIFILSVTY-YFLILDM 444
           AK + P     ES+     YIY L+   F+   +FI   T  Y  IL +
Sbjct: 80  AKKLDPLTPKQESKLKWKLYIYLLLMLGFLDMMLFIGKATLSYSTILGL 128


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 313 QPFPSFSESRTAIHFYIYRLMQCYFIAWQIFILSVTYYFLIL 438
           +PFP+F    T     ++R +  +F  + +F LS ++ F  L
Sbjct: 96  RPFPNFLHPFTGSELSLFRCLLLFFF-FLLFFLSFSFSFSFL 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,857,147
Number of Sequences: 5004
Number of extensions: 56903
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)