Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0487
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1568 - 27788314-27788619,27789125-27789294,27789868-277899...    31   0.91 
11_04_0366 - 16832018-16832371,16832746-16834752,16835109-16835480     28   8.5  
08_01_0120 - 957365-957552,957642-957780,957847-957970,958398-95...    28   8.5  

>07_03_1568 -
           27788314-27788619,27789125-27789294,27789868-27789979,
           27790063-27790117,27790201-27790316,27790731-27790812,
           27790974-27791228,27791326-27791454,27791539-27791747
          Length = 477

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +1

Query: 349 IHFYIYRLMQCYFIAWQIFILSVTYYFLILDMPS 450
           +H +  R  +CY I W+  +++VT  +++LD P+
Sbjct: 189 VHVHPKRFPRCYEIDWKSRVIAVTDNYVVLDKPA 222


>11_04_0366 - 16832018-16832371,16832746-16834752,16835109-16835480
          Length = 910

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 611 IVLVTCLCKTDLLILNCLAISTKDLFP 531
           I LV  LC++ L +LNC +++T   FP
Sbjct: 784 IRLVLRLCRSSLKLLNCPSLATVSQFP 810


>08_01_0120 -
           957365-957552,957642-957780,957847-957970,958398-958486
          Length = 179

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +1

Query: 457 VSKSAKPYKRYDPLILKTAIEAYEIGNRSLVEIAK 561
           +S SA PYKR  P  LKTA  A ++G  S + +++
Sbjct: 33  ISSSALPYKRTPPSWLKTA--ASDVGAFSFLSLSR 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,602,608
Number of Sequences: 37544
Number of extensions: 299801
Number of successful extensions: 496
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)