Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0487
         (714 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18371| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_35253| Best HMM Match : Extensin_2 (HMM E-Value=0.078)              28   6.5  
SB_38815| Best HMM Match : Laminin_II (HMM E-Value=1.3)                28   6.5  
SB_17141| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  

>SB_18371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 264

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 594 TCNKNNEISRWTQKKIT 644
           TCN N+E+SRWT+   T
Sbjct: 127 TCNDNDEVSRWTKTIFT 143


>SB_35253| Best HMM Match : Extensin_2 (HMM E-Value=0.078)
          Length = 585

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
 Frame = +1

Query: 310 VQPFPSFSESRTAIHFYIYRLMQCYFIAWQIFILSV---TYYFLILDMPSVCVSKSAKPY 480
           V P PS++ S T +H   Y+L +    ++      +    Y      +PS   S +    
Sbjct: 376 VTPIPSYTYSNTKLHVQRYQLTRTAIPSYTYNDTKLHIQRYQVTHTTIPSYTYSNTKLHV 435

Query: 481 KRYDPLILKTAIEAYEIGNRSLVEIAKQFNISKSVL 588
           +RY   + +TAI +Y   N  L    +Q+ ++++ +
Sbjct: 436 QRYQ--LTRTAIPSYTYSNTKL--HVQQYQVTRTAI 467


>SB_38815| Best HMM Match : Laminin_II (HMM E-Value=1.3)
          Length = 303

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = +1

Query: 388 IAWQIFILSVTYYFLILDMPSVCVSKSAKPYKRYDPLILKTAIEAYEIGNRSLVEIAKQF 567
           +A +I  LS     L + +PSV  S  A   +R  PL+   AIEA  +  +  +E  KQ 
Sbjct: 19  VAQEIADLSAQIEELQMSLPSVSPSH-AGAQQRVAPLLTPQAIEAPSLAQQLQLERTKQE 77

Query: 568 NI 573
           N+
Sbjct: 78  NL 79


>SB_17141| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 540

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 274 KSREGLKGR*KCSELNKNNNFVTPFDVSPPSNR 176
           K  +G     + SE N+ NN  TP  V PPS+R
Sbjct: 380 KKSDGKDSSEEDSEENQKNNLTTPSFVVPPSSR 412


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,970,108
Number of Sequences: 59808
Number of extensions: 375000
Number of successful extensions: 910
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)