Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0487
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000195-5|AAC24265.2|  504|Caenorhabditis elegans Hypothetical ...    31   0.82 
Z68315-1|CAA92669.1|  486|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U41029-3|AAF99952.2|  886|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>AF000195-5|AAC24265.2|  504|Caenorhabditis elegans Hypothetical
           protein C32F10.8a protein.
          Length = 504

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 115 QSINKRPKLLYKINLKQTKGICLMGGT 195
           QS+N++P   Y + L +T GIC++ G+
Sbjct: 437 QSLNQQPDFFYAMQLLETTGICIVPGS 463


>Z68315-1|CAA92669.1|  486|Caenorhabditis elegans Hypothetical
           protein F28C6.1 protein.
          Length = 486

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +3

Query: 150 NKLKTNKRNLFDGGDTSKGVTKLLFLFNSE 239
           N+ K NK NLF   DTS G     FL N+E
Sbjct: 170 NQEKRNKENLFPNDDTSSGKLFDYFLTNTE 199


>U41029-3|AAF99952.2|  886|Caenorhabditis elegans Hypothetical
           protein F47G3.1 protein.
          Length = 886

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 632 LCPP*DFIVLVTCLCKTDLLILNCLAIST 546
           + PP  FI+L+ C+  +  L++ C  IST
Sbjct: 5   IVPPTRFIILIACILASIQLLVQCSPIST 33


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,510,717
Number of Sequences: 27780
Number of extensions: 309680
Number of successful extensions: 715
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)