Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0487
         (714 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21770.1 68417.m03150 pseudouridine synthase family protein c...    31   1.0  
At4g31520.1 68417.m04476 SDA1 family protein contains Pfam profi...    30   1.8  
At4g15070.1 68417.m02315 DC1 domain-containing protein contains ...    28   5.3  
At2g28460.1 68415.m03457 DC1 domain-containing protein contains ...    28   5.3  
At5g50260.1 68418.m06224 cysteine proteinase, putative similar t...    27   9.3  
At3g61690.1 68416.m06913 expressed protein                             27   9.3  

>At4g21770.1 68417.m03150 pseudouridine synthase family protein
           contains Pfam profile PF00849: RNA pseudouridylate
           synthase
          Length = 472

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +1

Query: 349 IHFYIYRLMQCYFIAWQIFILSVTYYFLILDMPS 450
           +H +  R  +CY I W+  I++VT  ++ILD P+
Sbjct: 192 VHVHPKRSPRCYEIDWKSRIVAVTDSYVILDKPA 225


>At4g31520.1 68417.m04476 SDA1 family protein contains Pfam profile
           PF05285: SDA1
          Length = 698

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -2

Query: 584 TDLLILNCLAISTKDLFPIS*ASIAVFNIKGSYLL*GFALF-DTQTLGISKIRK 426
           TDLL  +CLA+ +   + ++ + I + N K   +    ALF D QTLG   +RK
Sbjct: 22  TDLLRTSCLAMPSGLRYQVAQSLILLMNRKSLVIEDLLALFLDIQTLGDKNLRK 75


>At4g15070.1 68417.m02315 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 889

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 653 YLLCNLFLCPP*DFIVLVTCL 591
           Y  C  ++CPP DF+V   CL
Sbjct: 534 YSSCPFYICPPCDFVVHQKCL 554


>At2g28460.1 68415.m03457 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 704

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -2

Query: 644 CNLFLCPP*DFIVLVTCL 591
           C L++CPP DF++  +C+
Sbjct: 294 CPLYMCPPCDFVIHKSCI 311


>At5g50260.1 68418.m06224 cysteine proteinase, putative similar to
           cysteine endopeptidase precursor CysEP GI:2944446 from
           [Ricinus communis]
          Length = 361

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +1

Query: 538 RSLVEIAKQFNISKSVLHRHVTRTMKSQGGHKKRLHNKY 654
           RSL E AK+FN+ K  + +H+  T K    +K +L NK+
Sbjct: 49  RSLEEKAKRFNVFKHNV-KHIHETNKKDKSYKLKL-NKF 85


>At3g61690.1 68416.m06913 expressed protein
          Length = 1303

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 295 KLAKSVQPFPSFSESRTAIHFYIYRLMQCYFIAWQIFI 408
           KL   +QP P   + R A+  Y+ RL+   F   QIF+
Sbjct: 48  KLIACIQPNPPSEDRRNAVASYVRRLIMECFPQVQIFM 85


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,263,053
Number of Sequences: 28952
Number of extensions: 271694
Number of successful extensions: 522
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)