Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0486
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0264 + 2030080-2031270 235 2e-62
01_02_0051 - 10655867-10657057 234 5e-62
01_03_0090 - 12347165-12348349 233 9e-62
12_02_0655 + 21588662-21589051 31 0.80
10_06_0022 - 9716537-9716649,9716709-9716826,9716958-9717076,971... 31 1.1
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279... 29 2.4
02_01_0375 + 2712289-2712957 29 3.2
10_06_0023 - 9727326-9727438,9727835-9727903,9727965-9728082,972... 29 4.2
06_03_1153 - 28047125-28047751 28 5.6
04_03_0847 - 20254736-20254933,20256127-20256201,20257538-202577... 28 7.4
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 27 9.8
>05_01_0264 + 2030080-2031270
Length = 396
Score = 235 bits (576), Expect = 2e-62
Identities = 111/179 (62%), Positives = 138/179 (77%), Gaps = 2/179 (1%)
Frame = +3
Query: 117 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 296
FLFTSESV EGHPDK+CDQ+SDA+LDA L +DPD+KVACET TKT MV++ GEIT+KANV
Sbjct: 7 FLFTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVACETCTKTNMVMVFGEITTKANV 66
Query: 297 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEEVGAGDQ 470
DY+K+VRET ++IG+ + G D C V++ ++QQSP+IA GVH + + EE+GAGDQ
Sbjct: 67 DYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQ 126
Query: 471 GLMFGYATDETEECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGA 647
G MFGYATDET E MPL+ VLA KL ++ E+R+NG W RPD KTQVT EY GA
Sbjct: 127 GHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYRNESGA 185
>01_02_0051 - 10655867-10657057
Length = 396
Score = 234 bits (572), Expect = 5e-62
Identities = 111/185 (60%), Positives = 140/185 (75%), Gaps = 2/185 (1%)
Frame = +3
Query: 99 MEDGSVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEI 278
M + FLFTSESV EGHPDK+CDQISDA+LDA L +DP++KVACET TKT MV++ GEI
Sbjct: 1 MAEVDTFLFTSESVNEGHPDKLCDQISDAVLDACLAEDPESKVACETCTKTNMVMVFGEI 60
Query: 279 TSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEE 452
T+KANVDY+K+VR+T + IG+ + G D + C V++ ++QQSP+IA GVH + + EE
Sbjct: 61 TTKANVDYEKIVRDTCRGIGFVSNDVGLDAEHCKVLVNIEQQSPDIAQGVHGHFTKRPEE 120
Query: 453 VGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYV 632
+GAGDQG MFGYATDET E MPL+ VLA KL ++ E+R+NG W RPD KTQVT EY
Sbjct: 121 IGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGACAWLRPDGKTQVTVEYQ 180
Query: 633 FAGGA 647
GA
Sbjct: 181 NDNGA 185
>01_03_0090 - 12347165-12348349
Length = 394
Score = 233 bits (570), Expect = 9e-62
Identities = 110/179 (61%), Positives = 136/179 (75%), Gaps = 2/179 (1%)
Frame = +3
Query: 117 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 296
FLFTSESV EGHPDK+CDQ+SDA+LDA L QDPD+KVACET TKT MV++ GEIT+KA V
Sbjct: 6 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKATV 65
Query: 297 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEEVGAGDQ 470
DY+K+VR+T + IG+ G D C V++ ++QQSP+IA GVH + + EE+GAGDQ
Sbjct: 66 DYEKIVRDTCRGIGFVSDDVGLDADRCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQ 125
Query: 471 GLMFGYATDETEECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGA 647
G MFGYATDET E MPL+ VLA KL ++ E+R+NG W RPD KTQVT EY+ GA
Sbjct: 126 GHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYLNDAGA 184
>12_02_0655 + 21588662-21589051
Length = 129
Score = 31.1 bits (67), Expect = 0.80
Identities = 20/53 (37%), Positives = 24/53 (45%)
Frame = +2
Query: 65 WIRENQRTQL*YGRWISIFVHIGICWRGSSRQNVRPNKRRYSRRAPESGSGRK 223
WI QR ++ G W RGS V P +RR SRR P SG R+
Sbjct: 27 WIGGRQRPRMWIGDWREE--------RGSVAVGVAPGRRRESRRRPGSGEARR 71
>10_06_0022 -
9716537-9716649,9716709-9716826,9716958-9717076,
9717238-9717476,9717793-9717849,9717933-9718019,
9718185-9718729,9718836-9719102
Length = 514
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +3
Query: 225 VACETITKTGMVLLCGEITSKANVDYQKVVRET--VKHIGYDDSSKGFDYKTCSVM 386
+ C +I+K GM+L IT + D+ K VR+ KH GY KG +K+ + M
Sbjct: 444 LVCGSISKVGMLLF---ITLRT--DWGKEVRKPSPYKHFGYHGKRKGLQFKSSNSM 494
>03_05_0640 -
26326832-26327166,26327295-26327529,26327665-26327908,
26328389-26328507,26328860-26329050,26329133-26329220,
26331653-26331715,26331816-26333944,26334084-26334186
Length = 1168
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +3
Query: 102 EDGSVFLFTSESVGEGHPDKM---CDQISDAILDAHLNQDPDAKVACETITKTGMVLLC 269
+DGS +LFTS+ E HP M D+ S+ IL E I K G L C
Sbjct: 765 QDGSEWLFTSKRTDESHPFTMHVNFDKFSEDILVGDELVIDGGMATFEVIEKVGNDLRC 823
>02_01_0375 + 2712289-2712957
Length = 222
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 525 VVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYV 632
VV +L++ + +++G WW RPDS EY+
Sbjct: 164 VVYWGRLSKALVWWKQSGNNWWPRPDSDLGEDFEYI 199
>10_06_0023 -
9727326-9727438,9727835-9727903,9727965-9728082,
9728232-9728350,9728506-9728695
Length = 202
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 225 VACETITKTGMVLLCGEITSKANVDYQKVVRET--VKHIGYDDSSKGFDYKTCSVM 386
+ C +I+K GM+L IT + D+ K V++ KH GY KG +K + M
Sbjct: 109 IVCGSISKVGMLLF---IT--LHTDWGKEVQKASPCKHFGYHAERKGLQFKYSNSM 159
>06_03_1153 - 28047125-28047751
Length = 208
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +2
Query: 119 FVHIGICWRG-SSRQNVRPNKRRYSRRAPESGSGRKSCM*NHN*NRYGA 262
+++ CW+ ++ P Y R P +G GR +H+ + YGA
Sbjct: 106 YIYRSQCWKSLKKKKKPPPPLPLYRPRPPPAGDGRPDVTVHHHHHHYGA 154
>04_03_0847 -
20254736-20254933,20256127-20256201,20257538-20257717,
20257802-20257869,20258563-20259125,20259198-20259235
Length = 373
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 566 ELCNFLIEFVCKHYSQRHAFFC 501
E+ +FL+ +H +QRHAF C
Sbjct: 87 EVIDFLLALPSRHPAQRHAFLC 108
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/71 (26%), Positives = 36/71 (50%)
Frame = +3
Query: 369 KTCSVMLALDQQSPNIAAGVHENRNDEEVGAGDQGLMFGYATDETEECMPLTVVLAHKLN 548
K SV++A+D Q P+ A+ + E+ G G Q EC+ + +VLA + N
Sbjct: 2288 KIASVVIAVDDQDPSNASDKDAPASTEDDGNGLQS-----------ECVHVDLVLAKQDN 2336
Query: 549 QKIAELRRNGE 581
K+ + +++ +
Sbjct: 2337 TKVEDTQKSNQ 2347
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,075,044
Number of Sequences: 37544
Number of extensions: 454414
Number of successful extensions: 1240
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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