Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0486
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)             301   3e-82
SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)             264   4e-71
SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)             223   1e-58
SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.)             154   7e-38
SB_53305| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=0.0056)        85   6e-17
SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0)             81   6e-16
SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23)              31   0.62 
SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)                 31   0.81 
SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0)              29   2.5  
SB_20311| Best HMM Match : PAN (HMM E-Value=0.00055)                   29   4.3  

>SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score =  301 bits (739), Expect = 3e-82
 Identities = 139/178 (78%), Positives = 155/178 (87%)
 Frame = +3

Query: 111 SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKA 290
           + FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVACET+ KTGM+LLCGEITS A
Sbjct: 29  NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACETVAKTGMILLCGEITSNA 88

Query: 291 NVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEEVGAGDQ 470
            VDYQ VVR+ +K IGYDDS KGFDYKTC+V++AL+QQS +IA GVH  R +E+VGAGDQ
Sbjct: 89  VVDYQSVVRQCIKDIGYDDSEKGFDYKTCNVLVALEQQSVDIAHGVHVGREEEDVGAGDQ 148

Query: 471 GLMFGYATDETEECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGG 644
           GLMFGYATDETEE MPLTVVLAHK+NQK+AE RR+G   WARPDSKTQVT EY F  G
Sbjct: 149 GLMFGYATDETEELMPLTVVLAHKMNQKLAEYRRDGTLPWARPDSKTQVTVEYKFEHG 206


>SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score =  264 bits (647), Expect = 4e-71
 Identities = 127/185 (68%), Positives = 141/185 (76%)
 Frame = +3

Query: 93  YDMEDGSVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCG 272
           Y   D   FLFTSESV EGH DKMCDQISDA+LDAHL QDP AKVACET TKTG+VLL G
Sbjct: 44  YSTSDCDNFLFTSESVNEGHSDKMCDQISDAVLDAHLEQDPYAKVACETATKTGLVLLFG 103

Query: 273 EITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEE 452
           EITS A VDYQ VVR T++ IGY+DSS GFDYKTCSV+LA+ +Q   IA  VH NR D+E
Sbjct: 104 EITSNARVDYQAVVRNTIRDIGYNDSSTGFDYKTCSVLLAIQEQVAEIAQTVHLNRRDDE 163

Query: 453 VGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYV 632
           +GAGDQGLMFGYATDETEE MPLT VLAHKL  ++AE R+     W  PD KTQVT +Y 
Sbjct: 164 IGAGDQGLMFGYATDETEELMPLTTVLAHKLCARLAECRKGKILPWLLPDGKTQVTVDYR 223

Query: 633 FAGGA 647
              GA
Sbjct: 224 LERGA 228


>SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 460

 Score =  223 bits (545), Expect = 1e-58
 Identities = 99/136 (72%), Positives = 119/136 (87%)
 Frame = +3

Query: 237 TITKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNI 416
           ++ KTGM+++CGEITS ANVDYQKVVR+T+K IGYDDSSKGFDYKTC+V+ A++QQSP+I
Sbjct: 2   SVAKTGMIVVCGEITSLANVDYQKVVRDTIKQIGYDDSSKGFDYKTCTVLQAIEQQSPDI 61

Query: 417 AAGVHENRNDEEVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKIAELRRNGEFWWAR 596
           A GVH  R+DE++GAGDQGLMFGYATDET+E MPLTVVLAH LN+++A+ RRNG   W R
Sbjct: 62  AQGVHIGRSDEDLGAGDQGLMFGYATDETDELMPLTVVLAHGLNKRLADCRRNGSLPWVR 121

Query: 597 PDSKTQVTCEYVFAGG 644
           PDSKTQVT EY F GG
Sbjct: 122 PDSKTQVTVEYKFQGG 137


>SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score =  154 bits (373), Expect = 7e-38
 Identities = 68/82 (82%), Positives = 77/82 (93%)
 Frame = +3

Query: 111 SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKA 290
           + FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVACE++ KTGM+++CGEITS A
Sbjct: 9   NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACESVAKTGMIVVCGEITSLA 68

Query: 291 NVDYQKVVRETVKHIGYDDSSK 356
           NVDYQKVVR+T+K IGYDDSSK
Sbjct: 69  NVDYQKVVRDTIKQIGYDDSSK 90


>SB_53305| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=0.0056)
          Length = 70

 Score = 84.6 bits (200), Expect = 6e-17
 Identities = 37/41 (90%), Positives = 39/41 (95%)
 Frame = +3

Query: 111 SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVAC 233
           + FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVAC
Sbjct: 29  NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVAC 69


>SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0)
          Length = 192

 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 36/61 (59%), Positives = 46/61 (75%)
 Frame = +3

Query: 447 EEVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCE 626
           E+ GAGDQGLMFGYAT+ET+  MP  V  AH+L ++ +ELRRNG   W RPD+K+QVT  
Sbjct: 8   EDQGAGDQGLMFGYATNETDSLMPAPVYYAHRLVERQSELRRNGTLPWLRPDAKSQVTIN 67

Query: 627 Y 629
           +
Sbjct: 68  W 68


>SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23)
          Length = 390

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +3

Query: 270 GEITSKANVDYQKVVRETV---KHIGYDDSSKGFDYK 371
           GEITS  N+D +K+    +   K I YD    G+DY+
Sbjct: 103 GEITSNVNIDREKLPGSNLLEFKAIAYDAKGAGYDYR 139


>SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)
          Length = 681

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 492 LHNRTSSPGLLPQLPRHFCSHAPQQQCLVIVGL 394
           L N T+ P + PQ P H  SHA +   ++I G+
Sbjct: 99  LGNETARPAIAPQEPEHLVSHANKILTVIIQGM 131


>SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0)
          Length = 550

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 238 VSHATFASGS*FRCASRIASLIWSHILSG 152
           +S +  A  + FRC+ R  S++W H+ +G
Sbjct: 287 ISDSDLAKVASFRCSGRFPSIVWRHMTNG 315


>SB_20311| Best HMM Match : PAN (HMM E-Value=0.00055)
          Length = 443

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 2/77 (2%)
 Frame = +2

Query: 404 ITKHCC-WGA*EQK*RGSWGRRPGL-DVRLCNR*DRRMHAVDCSACTQTQSENCRAQAKW 577
           +T++C  WG+      G WG+   L D         R     CS C Q Q E  +    W
Sbjct: 259 LTRNCAKWGSNGTLPEGEWGKNALLKDGTKTETSKIRRQFQQCSVCYQIQPETTKCFIAW 318

Query: 578 RILVGKTRFKNTGYLRI 628
              +     +   Y+RI
Sbjct: 319 TKSLRTILHRRKKYIRI 335


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,425,358
Number of Sequences: 59808
Number of extensions: 543125
Number of successful extensions: 1492
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1491
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)