Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0485
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    28   1.5  
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom...    27   2.6  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    27   2.6  
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    27   3.5  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    26   6.0  

>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
 Frame = +1

Query: 184 GVCSHRCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLRPIQGQPRCSERTE--GIS 357
           G+    CL   GC G G  +L+ +  R    +   A     R +  +    E  E  G+ 
Sbjct: 292 GIYGAGCLITEGCRGEGGYLLNSKGERFMERYAPTAKDLASRDVVSRAMTVEIREGRGVG 351

Query: 358 LTVFETFLPLS--PVGLLLQQLP 420
                 +L LS  P  +L ++LP
Sbjct: 352 PEKDHCYLQLSHLPAEILKERLP 374


>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 198 SLPVWLWVCWPRKTHAIRTSTKDA 269
           ++P+ LW+C P  T  + TST+DA
Sbjct: 94  NVPITLWICAP-LTAILSTSTRDA 116


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 102 KAVLSTYVKRTCYFFENS 155
           KAV   YV+R CY+ EN+
Sbjct: 271 KAVFDKYVERECYYSENA 288


>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +2

Query: 335 ANELKALASLYLKRSY-HYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTK 511
           A +  ALAS  ++  + + L S S FN Y    +       +L++   E  + ++KHV K
Sbjct: 630 AEDQNALASSNIETEFLNALESVSEFNEYGPVLKSSPSPI-ELTEQETEFVVKVVKHVFK 688

Query: 512 RGGKMDFSSHTTL 550
               + F  H TL
Sbjct: 689 DHLVVQFQLHNTL 701


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = -3

Query: 180  IFDAIYLVANSRKNNKCV*RMSKVLPLHTLAQKATSNNDSSRCKRPHKDNRL 25
            + D +YL  +S ++      + +VLP+    +K  SN+ S +      DN +
Sbjct: 901  VVDRVYLKKSSTRHTSDNNSLEEVLPIFPGVRKLVSNSQSEKIGDLSNDNSM 952


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,749,373
Number of Sequences: 5004
Number of extensions: 54621
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)