Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0484
(549 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 27 0.17
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 25 0.67
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 25 0.67
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 22 3.6
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 22 4.7
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 21 8.2
DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein pr... 21 8.2
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 21 8.2
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 21 8.2
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 21 8.2
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 21 8.2
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 26.6 bits (56), Expect = 0.17
Identities = 22/102 (21%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Frame = +1
Query: 229 EQPSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTEL-ESPINQTETTEPQFSV 405
E+ S+N+A ++ T+ + + + ++ + S+ Q ++TEL + I+ +E S+
Sbjct: 489 EEFQSLNNAVGEMEATNVTNILSMDNTQYNLDLSLPQLDSTELADLDISLSENLSSGLSI 548
Query: 406 SKQPSGEISAIPESVSSVNQEHTTEPQSSMDQEPSNEISATT 531
S S PE+ +N E + +S+ + I+ T
Sbjct: 549 SD------STKPETSKGINAEPSNIEESNNMTDSFTRIANNT 584
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 24.6 bits (51), Expect = 0.67
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = -1
Query: 234 LFCSFF-IINWFWFYGRDRFSKRFLVH***LLCCFFSVCWRFGLYCLC 94
LF FF I W +G +RF CC++ +CW +C
Sbjct: 456 LFLMFFECIAISWAFGVNRFYDGIRDMIGYYPCCWWKICWTITTPAIC 503
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 24.6 bits (51), Expect = 0.67
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = -1
Query: 234 LFCSFF-IINWFWFYGRDRFSKRFLVH***LLCCFFSVCWRFGLYCLC 94
LF FF I W +G +RF CC++ +CW +C
Sbjct: 509 LFLMFFECIAISWAFGVNRFYDGIRDMIGYYPCCWWKICWTITTPAIC 556
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 22.2 bits (45), Expect = 3.6
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = +1
Query: 280 EAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQFSVS 408
E E ERS+ + S D+ NT+ + + ++ E +S
Sbjct: 71 EIEKLGSERSKSRSPDSRDRSNTSNISKTVILSDKLESSDDIS 113
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 21.8 bits (44), Expect = 4.7
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +1
Query: 280 EAELANQERSREQPNFSIDQKNTTELESPI---NQTETTEPQFSVSKQPSG 423
E E ERS+ + S D+ NT+ I N+ E+++ S+ + P G
Sbjct: 71 EIEKLGSERSKSRSPDSRDRSNTSNTSKTIILSNKLESSD-DISLFRGPEG 120
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 21.0 bits (42), Expect = 8.2
Identities = 10/43 (23%), Positives = 19/43 (44%)
Frame = +1
Query: 205 PIDNEETTEQPSSINHASKDIVLTSEAELANQERSREQPNFSI 333
P+D++ T + S + D+V+ + E P F+I
Sbjct: 169 PLDSQNCTVEIESYGYTVLDVVMYWKETPVRGVEEAELPQFTI 211
>DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein
protein.
Length = 486
Score = 21.0 bits (42), Expect = 8.2
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -3
Query: 442 LVLLKFLQMAVCLLKIVVLL 383
LVLL F +CL+ ++ L+
Sbjct: 392 LVLLNFGWQMICLIVVIALV 411
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 21.0 bits (42), Expect = 8.2
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = +1
Query: 280 EAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQFSVS 408
E E ERS+ + S D+ NT+ + ++ E +S
Sbjct: 71 EIEKLGSERSKSRSPDSRDRSNTSNTSKTVILSDKLESSDDIS 113
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.0 bits (42), Expect = 8.2
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = +1
Query: 280 EAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQFSVS 408
E E ERS+ + S D+ NT+ + ++ E +S
Sbjct: 71 EIEKLGSERSKSRSPDSRDRSNTSNTSKTVILSDKLESSDDIS 113
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 21.0 bits (42), Expect = 8.2
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = +1
Query: 280 EAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQFSVS 408
E E ERS+ + S D+ NT+ + ++ E +S
Sbjct: 71 EIEKLGSERSKSRSPGSRDRSNTSNTSKTVILSDKLESSDDIS 113
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 21.0 bits (42), Expect = 8.2
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = +1
Query: 280 EAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQFSVS 408
E E ERS+ + S D+ NT+ + ++ E +S
Sbjct: 71 EIEKLGSERSKSRSPDSRDRSNTSNTSKTVILSDKLESSDDIS 113
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.297 0.115 0.292
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,186
Number of Sequences: 438
Number of extensions: 3444
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 17 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (20.7 bits)
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