Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0484
(549 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g34355.1 68414.m04265 forkhead-associated domain-containing p... 37 0.010
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 35 0.031
At2g24260.1 68415.m02898 basic helix-loop-helix (bHLH) family pr... 35 0.031
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 35 0.041
At5g63720.1 68418.m07998 hypothetical protein 34 0.054
At2g46240.1 68415.m05750 IQ domain-containing protein / BAG doma... 33 0.17
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso... 32 0.22
At4g31805.1 68417.m04519 WRKY family transcription factor identi... 32 0.29
At3g61690.1 68416.m06913 expressed protein 31 0.38
At2g34300.1 68415.m04196 dehydration-responsive protein-related ... 31 0.51
At5g55310.1 68418.m06893 DNA topoisomerase I, putative similar t... 31 0.67
At2g40070.1 68415.m04923 expressed protein 30 0.89
At4g25520.1 68417.m03680 transcriptional co-regulator family pro... 30 1.2
At4g14310.2 68417.m02205 peroxisomal membrane protein-related co... 30 1.2
At4g14310.1 68417.m02204 peroxisomal membrane protein-related co... 30 1.2
At1g74160.1 68414.m08589 expressed protein 30 1.2
At3g55730.1 68416.m06191 myb family transcription factor (MYB109... 29 1.5
At3g51650.1 68416.m05664 expressed protein 29 1.5
At3g51150.1 68416.m05601 kinesin motor family protein contains P... 29 1.5
At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family... 29 1.5
At5g40450.1 68418.m04905 expressed protein 29 2.0
At5g10660.1 68418.m01234 calmodulin-binding protein-related cont... 29 2.0
At1g78230.1 68414.m09116 leucine-rich repeat family protein 29 2.0
At1g17440.2 68414.m02133 transcription initiation factor IID (TF... 29 2.0
At1g17440.1 68414.m02132 transcription initiation factor IID (TF... 29 2.0
At1g18700.1 68414.m02333 DNAJ heat shock N-terminal domain-conta... 29 2.7
At1g05320.1 68414.m00539 myosin-related similar to non-muscle my... 29 2.7
At2g11090.1 68415.m01187 expressed protein 28 3.6
At4g04400.1 68417.m00634 hypothetical protein contains Pfam prof... 28 4.7
At3g22790.1 68416.m02873 kinase interacting family protein simil... 28 4.7
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 28 4.7
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 28 4.7
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 28 4.7
At2g43210.2 68415.m05371 UBX domain-containing protein contains ... 27 6.2
At2g43210.1 68415.m05370 UBX domain-containing protein contains ... 27 6.2
At5g51530.1 68418.m06390 ubiquitin carboxyl-terminal hydrolase-r... 27 8.3
At5g17910.1 68418.m02100 expressed protein 27 8.3
At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase f... 27 8.3
At3g51640.1 68416.m05663 expressed protein 27 8.3
At3g17690.1 68416.m02258 cyclic nucleotide-binding transporter 2... 27 8.3
At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi... 27 8.3
At1g77620.1 68414.m09037 expressed protein 27 8.3
>At1g34355.1 68414.m04265 forkhead-associated domain-containing
protein / FHA domain-containing protein
Length = 1477
Score = 36.7 bits (81), Expect = 0.010
Identities = 39/173 (22%), Positives = 77/173 (44%), Gaps = 1/173 (0%)
Frame = +1
Query: 34 KVVEVTKVQSPINQEQFREPAQTIXXXXXXXXXXXXXQLLSVNQEPFGETIPTIEPEPID 213
+V T++++ ++Q+ E I Q+++V+ F + PT+E E
Sbjct: 746 EVTVETEIENLLHQKSNVETKADILIHEDYGETEVSRQIITVSPNSFSKAEPTLETED-S 804
Query: 214 NEETTEQPSSINHASKDIVLTSEAE-LANQERSREQPNFSIDQKNTTELESPINQTETTE 390
++ S + ++ + +E E L NQ+R+ E K ++ SP++ +T
Sbjct: 805 RQQARGLVGSDSEFQSEVAMKTECENLLNQKRNGE-------TKVSSRQASPVSDCLST- 856
Query: 391 PQFSVSKQPSGEISAIPESVSSVNQEHTTEPQSSMDQEPSNEISATTKSQSSI 549
P+ +S + +I ++ S S E P + DQE S IS T K ++ +
Sbjct: 857 PKDRLSSINTDDIQSLCSS-SQPPSESEVNPATDQDQE-SGIISETEKPKTEL 907
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 35.1 bits (77), Expect = 0.031
Identities = 27/126 (21%), Positives = 53/126 (42%)
Frame = +1
Query: 148 LLSVNQEPFGETIPTIEPEPIDNEETTEQPSSINHASKDIVLTSEAELANQERSREQPNF 327
L +++ + T+PTIE E + +++ E N +++ EAE + R E
Sbjct: 67 LEEIDEADYHLTLPTIESEITERKQSPEDDDDTNETVDEMIEGEEAEEDGEGRDDEDDED 126
Query: 328 SIDQKNTTELESPINQTETTEPQFSVSKQPSGEISAIPESVSSVNQEHTTEPQSSMDQEP 507
+ + E ++ N+ + E + K+ + S S + + T E Q ++ P
Sbjct: 127 DEETRKKKEKKAKRNKEKKKEKKKKKQKKINEAAKNQDASAVSCDGDDTVEEQVEEEEIP 186
Query: 508 SNEISA 525
E SA
Sbjct: 187 P-EFSA 191
>At2g24260.1 68415.m02898 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 350
Score = 35.1 bits (77), Expect = 0.031
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = +1
Query: 319 PNFSIDQKNTTELESPINQTET-TEPQFSVSKQPSGEISAIPESVSSV--NQEHTTEPQS 489
PNF I Q + L + QT+T T+PQ S S G ++A P+S + + + T+P S
Sbjct: 91 PNFQIPQGSGGGLMNQQGQTQTQTQPQASASTATGGTVAAPPQSRTKIRARRGQATDPHS 150
Query: 490 SMDQEPSNEISATTKS 537
++ I+ K+
Sbjct: 151 IAERLRRERIAERMKA 166
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 34.7 bits (76), Expect = 0.041
Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 1/111 (0%)
Frame = +1
Query: 154 SVNQEPFGETIPTIEPEPIDNEETTEQPSSINHASKDIVLTS-EAELANQERSREQPNFS 330
+ NQ P G PT P P + ETT+ P+ + + + +L+ +A Q +
Sbjct: 644 NTNQPPMGAPTPTQAPTP--SSETTQVPTPSSESDQSQILSPVQAPTPVQSSTPSSEPTQ 701
Query: 331 IDQKNTTELESPINQTETTEPQFSVSKQPSGEISAIPESVSSVNQEHTTEP 483
+ +++E N + P + S E S +P S NQ + P
Sbjct: 702 VPTPSSSESYQAPNLSPVQAPTPVQAPTTSSETSQVPTPSSESNQSPSQAP 752
>At5g63720.1 68418.m07998 hypothetical protein
Length = 492
Score = 34.3 bits (75), Expect = 0.054
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 3/121 (2%)
Frame = +1
Query: 190 TIEPEPIDNEETT--EQPSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELES 363
T P+P+ + ++P+ N AS+ + + L +QE F D T ++
Sbjct: 219 TSPPQPLPPRAVSGFKKPNQSNRASQKMPIMKPT-LMDQETE----TFDDDSSETEADQT 273
Query: 364 P-INQTETTEPQFSVSKQPSGEISAIPESVSSVNQEHTTEPQSSMDQEPSNEISATTKSQ 540
P +E+ + + S S++ SGE + S E+ TE +S P N+ S + S
Sbjct: 274 PSATGSESEDEEVSTSQEYSGETGSSSGSEWETQAENDTESKSESSYPPQNDDSVSEVST 333
Query: 541 S 543
S
Sbjct: 334 S 334
>At2g46240.1 68415.m05750 IQ domain-containing protein / BAG
domain-containing protein contains Pfam profiles PF00612:
IQ calmodulin-binding motif, PF02179: BAG (Apoptosis
regulator Bcl-2 protein) domain
Length = 1043
Score = 32.7 bits (71), Expect = 0.17
Identities = 35/121 (28%), Positives = 49/121 (40%), Gaps = 7/121 (5%)
Frame = +1
Query: 178 ETIPTIEPEPIDNEETTEQPSSINHASK---DIVLTSEAELANQERSREQPNFSIDQKNT 348
ET +PE E SS N K DIVL SE N E S E P ID++
Sbjct: 830 ETNSIRDPENASEVSEAETNSSENENRKGEDDIVLHSEK---NVELS-ELPVGVIDEETQ 885
Query: 349 TELESPIN----QTETTEPQFSVSKQPSGEISAIPESVSSVNQEHTTEPQSSMDQEPSNE 516
+ P + + T + Q E+ P + + Q+ T+EPQ +Q P E
Sbjct: 886 PLSQDPSSSYTREGNMTAMDPKTASQEETEVDHSPNNSKGIGQQ-TSEPQDEKEQSPETE 944
Query: 517 I 519
+
Sbjct: 945 V 945
>At4g37820.1 68417.m05351 expressed protein Kaposi's
sarcoma-associated herpes-like virus ORF73gene, Kaposi's
sarcoma-associated herpesvirus, U52064
Length = 532
Score = 32.3 bits (70), Expect = 0.22
Identities = 25/113 (22%), Positives = 47/113 (41%)
Frame = +1
Query: 196 EPEPIDNEETTEQPSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQ 375
+PE EE++ Q + E + +E E+P + ++++ E+ I +
Sbjct: 333 KPERKKKEESSSQGEGKEEEPEK--REKEDSSSQEESKEEEPENKEKEASSSQEENEIKE 390
Query: 376 TETTEPQFSVSKQPSGEISAIPESVSSVNQEHTTEPQSSMDQEPSNEISATTK 534
TE E + S S Q E + S ++ T + ++Q S + S T K
Sbjct: 391 TEIKEKEES-SSQEGNENKETEKKSSESQRKENTNSEKKIEQVESTDSSNTQK 442
>At4g31805.1 68417.m04519 WRKY family transcription factor identical
to WRKY DNA-binding protein 18 (WRKY18) GI:13506730 from
[Arabidopsis thaliana]
Length = 344
Score = 31.9 bits (69), Expect = 0.29
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 5/123 (4%)
Frame = +1
Query: 196 EPEPIDNE-ETTEQPSSINHAS--KDIVLTSEAELANQERSREQPN-FSIDQKNTTEL-E 360
EPE E ++ E P + S +V+ S+ EL R Q F ++ K + +
Sbjct: 81 EPETNTFESQSRESPLEVGIGSFLLYLVVASKTELDKMTNLRMQMEMFLLNAKEQLQKKD 140
Query: 361 SPINQTETTEPQFSVSKQPSGEISAIPESVSSVNQEHTTEPQSSMDQEPSNEISATTKSQ 540
+P++ E + QFS + + S ES SSV QE TE + S ++ +K Q
Sbjct: 141 TPMSSNEASGFQFSPQEFSNLASSIFQESSSSVLQEEYTEFEVSEPEDYRRGTDCNSKLQ 200
Query: 541 SSI 549
+ +
Sbjct: 201 AEV 203
>At3g61690.1 68416.m06913 expressed protein
Length = 1303
Score = 31.5 bits (68), Expect = 0.38
Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Frame = +1
Query: 145 QLLSVNQEPFGETIP-TIEPEPIDNEETTEQPSSINHASKDIVLTSEAELANQERSREQP 321
Q ++ NQ + + T++PE + N + +S ++ T L RSR P
Sbjct: 461 QEVNSNQSALNDKLQQTVKPETLVNNFHGRHIFARTRSSPELTETHGEALLQSRRSRAAP 520
Query: 322 NFSIDQKNTTELESPINQTETTEPQFSVSKQPSGEISAIPESVSSVNQEHTTEPQSSMD 498
+ Q N+T ++S I + S + S + S++ + S + + T + S+++
Sbjct: 521 DAGKRQTNSTRVDS-IRKKSLESETLSSGVRYSADSSSVRHTPSPQSPDSTADMSSAVN 578
>At2g34300.1 68415.m04196 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 770
Score = 31.1 bits (67), Expect = 0.51
Identities = 22/106 (20%), Positives = 49/106 (46%)
Frame = +1
Query: 229 EQPSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQFSVS 408
E+ ++ + T++ E E S E+ N + E ++TE + + S
Sbjct: 133 EKEKNVKEVGSESDETTQKEKTQLEESTEENKSEDGNGNEEKAEENASETEESTEKSSKE 192
Query: 409 KQPSGEISAIPESVSSVNQEHTTEPQSSMDQEPSNEISATTKSQSS 546
P+G+ + I + S+ + +T+ S +++ + + S+ +K QSS
Sbjct: 193 VFPAGDQAEITKESSTGDGAWSTQLVESQNEKKAQQ-SSISKDQSS 237
>At5g55310.1 68418.m06893 DNA topoisomerase I, putative similar to
Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis
thaliana]
Length = 917
Score = 30.7 bits (66), Expect = 0.67
Identities = 21/122 (17%), Positives = 44/122 (36%)
Frame = +1
Query: 178 ETIPTIEPEPIDNEETTEQPSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTEL 357
+ IP + + TT +PS IN+A ++ + S PN S + +
Sbjct: 24 DDIPLVFKRNSNTAATTNRPSPINNAMRNSAIGSTKSSPPMRSPLTSPNRSASSSTRSSM 83
Query: 358 ESPINQTETTEPQFSVSKQPSGEISAIPESVSSVNQEHTTEPQSSMDQEPSNEISATTKS 537
P + ++ + ++ + S + + + + + D E +SA K
Sbjct: 84 MKPALPSSSSVQRSTLKSPLRDDRSVVAKERNGFGKAPSVSKSDDEDSEDDKPLSARLKL 143
Query: 538 QS 543
S
Sbjct: 144 DS 145
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 30.3 bits (65), Expect = 0.89
Identities = 21/76 (27%), Positives = 34/76 (44%)
Frame = +1
Query: 217 EETTEQPSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQ 396
E +Q + A KD L+ E+ + R +EQ N ++ N E E+P+ T P
Sbjct: 17 ERQRQQLRASMMAEKDEELSLFLEM--RRREKEQDNLLLNN-NPDEFETPLGSKHGTSPV 73
Query: 397 FSVSKQPSGEISAIPE 444
F++S A P+
Sbjct: 74 FNISSGAPPSRKAAPD 89
>At4g25520.1 68417.m03680 transcriptional co-regulator family
protein contains similarity to GP|18033922|gb|AAL57277
SEUSS transcriptional co-regulator [Arabidopsis
thaliana]
Length = 748
Score = 29.9 bits (64), Expect = 1.2
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
Frame = +1
Query: 223 TTEQPSSINHASKDIV---LTSEAELANQERSREQPNFSIDQKNTTELESPINQTETTEP 393
+ + PSS + ++V + ++ Q+R+ P + Q + +L+SP + T E
Sbjct: 596 SNQSPSSSSQQRHNLVTGGFPNSPQMQQQQRTMNGPTNILPQNHPHQLQSPHSHGNTPEQ 655
Query: 394 QFSVSKQPSGEISAIPESVSSVNQEHTTEPQSSMDQEPSNEISATTKSQS 543
Q + Q E+S E+ SV Q+ QS + +A+T + S
Sbjct: 656 Q--MLHQLLQEMS---ENGGSVQQQQAFSGQSGSNSNAERNTTASTSNIS 700
>At4g14310.2 68417.m02205 peroxisomal membrane protein-related
contains weak similarity to Peroxisomal membrane protein
2 (22 kDa peroxisomal membrane protein)
(Swiss-Prot:P42925) [Mus musculus]
Length = 965
Score = 29.9 bits (64), Expect = 1.2
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 217 EETTEQPSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELE 360
E TE+PS N SKD+ LTS L R+ E D++N E+E
Sbjct: 457 EMDTEEPSKENDVSKDVNLTS--NLTEILRANEALEEIDDEENREEME 502
>At4g14310.1 68417.m02204 peroxisomal membrane protein-related
contains weak similarity to Peroxisomal membrane protein
2 (22 kDa peroxisomal membrane protein)
(Swiss-Prot:P42925) [Mus musculus]
Length = 1087
Score = 29.9 bits (64), Expect = 1.2
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 217 EETTEQPSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELE 360
E TE+PS N SKD+ LTS L R+ E D++N E+E
Sbjct: 457 EMDTEEPSKENDVSKDVNLTS--NLTEILRANEALEEIDDEENREEME 502
>At1g74160.1 68414.m08589 expressed protein
Length = 1030
Score = 29.9 bits (64), Expect = 1.2
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
Frame = +1
Query: 202 EPIDNEETTEQPSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQTE 381
+P+ N +P+ HA ++ VL +A + + + E PNF +E+E +N E
Sbjct: 360 KPLSNTRFPVEPAPWKHADRNRVLQKQASMPVKAKPYEAPNF--PPTVYSEMERRLNDLE 417
Query: 382 TTEPQFSVSKQPSGEISAIPESVSSVNQEHTTEPQSS----MDQEPSNEISATTKSQSS 546
F S + + I ES+ S T + Q S + ++ E SAT+ S
Sbjct: 418 -----FKHSGKDLRALKQILESMQSKGFLDTEKQQQSTNFAVQRDYERENSATSNHAMS 471
>At3g55730.1 68416.m06191 myb family transcription factor (MYB109)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 399
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = +1
Query: 370 NQTETTEPQFSVSKQPSGEISAIPESVSSVN----QEHTTEPQSSMDQE 504
N ETT P S + P G+I++ P V+ +E EPQ +Q+
Sbjct: 180 NVDETTNPPSSKQQLPQGDINSSPPKPPQVSDVVMEEAANEPQEPQEQQ 228
>At3g51650.1 68416.m05664 expressed protein
Length = 826
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +1
Query: 274 TSEAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQFSVSKQPSGEISAIPESVS 453
T+ ++ + SRE P S Q +P++ T + S + QP+ +IS +P VS
Sbjct: 473 TNNPVVSEPKPSRE-PRKSWHQLFARSTPAPVSSNVNTISRPSTNPQPNVQISQVPSQVS 531
Query: 454 SV 459
S+
Sbjct: 532 SI 533
>At3g51150.1 68416.m05601 kinesin motor family protein contains Pfam
domain, PF00225: Kinesin motor domain
Length = 1025
Score = 29.5 bits (63), Expect = 1.5
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 20/127 (15%)
Frame = +1
Query: 196 EPEPIDNEET--------TEQPSSINHASKDIV-----LTSEAELANQERSREQPNFSI- 333
EP +D+E+T TE P I + +I+ S L E +P
Sbjct: 528 EPSEVDSEDTCTELQCIETESPGIIMYPEPNILPDRCKAVSALPLCEPESKNSRPPTETA 587
Query: 334 ---DQKNTTELESPINQTETTEPQFSVS---KQPSGEISAIPESVSSVNQEHTTEPQSSM 495
++K TE E + E + SVS K+ SG I P V S+ E + S++
Sbjct: 588 EEKEEKEETE-EKEEEEEERVKEVSSVSIQTKEKSGPIKVSPRCVLSLTDESFPDESSNL 646
Query: 496 DQEPSNE 516
++P+++
Sbjct: 647 KRDPTHQ 653
>At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family
protein (ROS1) similar to DEMETER protein [Arabidopsis
thaliana] GI:21743571; contains Pfam profile PF00730:
HhH-GPD superfamily base excision DNA repair protein
Length = 1393
Score = 29.5 bits (63), Expect = 1.5
Identities = 27/103 (26%), Positives = 43/103 (41%)
Frame = +1
Query: 154 SVNQEPFGETIPTIEPEPIDNEETTEQPSSINHASKDIVLTSEAELANQERSREQPNFSI 333
S N + ++P+I+ +D+EET P NH+S + T E + S E S
Sbjct: 632 SSNFDAGTSSMPSIQITYLDSEETMSSPPDHNHSSVTLKNTQPDEEKDYVPSNETSRSSS 691
Query: 334 DQKNTTELESPINQTETTEPQFSVSKQPSGEISAIPESVSSVN 462
+ + ES T++ E S K S E+ E +N
Sbjct: 692 EIAISAH-ESVDKTTDSKEYVDSDRKGSSVEVDKTDEKCRVLN 733
>At5g40450.1 68418.m04905 expressed protein
Length = 2910
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 1/118 (0%)
Frame = +1
Query: 154 SVNQEPFGETIPTIEPEPIDN-EETTEQPSSINHASKDIVLTSEAELANQERSREQPNFS 330
+V +E GE + + +D+ +E + + N A +D+ + + +EL +S Q +
Sbjct: 2512 TVPKEAIGEELKVPSSKVLDDIQENSNTEAVTNFADRDLPVQNLSELIQSHQSPNQVEET 2571
Query: 331 IDQKNTTELESPINQTETTEPQFSVSKQPSGEISAIPESVSSVNQEHTTEPQSSMDQE 504
+ N + + + V QP + A QEH + + ++
Sbjct: 2572 SFEFNKAQEDKKEETVDALITNVQVQDQPKEDFEAAAIEKEISEQEHKLNDLTDVQED 2629
Score = 28.3 bits (60), Expect = 3.6
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
Frame = +1
Query: 274 TSEAELANQERSREQPNFSIDQKNTTE--LESPINQTETTEPQFSVSKQPSGEISAIPES 447
+ EAE +E + I++ N E E Q ET E P EI
Sbjct: 2278 SGEAEKIKEESGLAGKSLPIEEINLQEEHKEEVKVQEETRE---IAQVLPREEILISSSP 2334
Query: 448 VSSVNQEHTTEPQSSMDQEPSNEISATTKSQSSI 549
+S+ QEH + ++EP + + +T + S+
Sbjct: 2335 LSAEEQEHVISDEKQEEREPQQDFNGSTSEKISL 2368
>At5g10660.1 68418.m01234 calmodulin-binding protein-related
contains weak similarity to calmodulin-binding proteins
Length = 407
Score = 29.1 bits (62), Expect = 2.0
Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 2/115 (1%)
Frame = +1
Query: 193 IEPEPIDNEETTEQPSSINHASKDIVLTSEAELANQERSRE--QPNFSIDQKNTTELESP 366
I P+ E I D+ ++ E +E + QP+ S ++K T+ + +
Sbjct: 192 ISPDSSPLASAHEDEEEIVKVETDVHISDHGEEPKEEDKDQFAQPDESGEEKETSPVAAS 251
Query: 367 INQTETTEPQFSVSKQPSGEISAIPESVSSVNQEHTTEPQSSMDQEPSNEISATT 531
+ + S + E PE++ N E E + D E ++E ATT
Sbjct: 252 TEEQKGELIDEDKSTEQIEEPKE-PENIEENNSEEEEEVKKKSDDEENSETVATT 305
>At1g78230.1 68414.m09116 leucine-rich repeat family protein
Length = 676
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +1
Query: 196 EP-EPIDNEETTEQPSSINHASKDIVLTSEAELANQE-RSREQPNFSIDQKNTTELESPI 369
EP +P++N+E + S I H S D E E +++ +RE F + ++ ++S
Sbjct: 129 EPVKPLENDEPNNKDSPIKHESYD----GEDERDDKDSTNREFSKFHVHERAVESVKSKE 184
Query: 370 NQTETTEPQFSVSKQPSGEIS 432
T+T+E + G +S
Sbjct: 185 EVTDTSENGDDNDEDEGGHVS 205
>At1g17440.2 68414.m02133 transcription initiation factor IID
(TFIID) subunit A family protein similar to SP|Q16514
Transcription initiation factor TFIID 20/15 kDa subunits
(TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
profile PF03847: Transcription initiation factor TFIID
subunit A
Length = 683
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = +1
Query: 298 QERSREQPNFSIDQKNTTELESPINQTETTEPQFSVSKQPSGEISAIPESVSSVNQEHTT 477
Q++ ++QP + Q+ + + INQ + + S + Q S ++ S Q TT
Sbjct: 455 QQQLQQQPQQQMQQQQQQQQQMQINQQQPSPRMLSHAGQKSVSLTG---SQPEATQSGTT 511
Query: 478 EP--QSSMDQEPSNEISATTKSQSSI 549
P SS E +N++ K Q +
Sbjct: 512 TPGGSSSQGTEATNQLLGKRKIQDLV 537
>At1g17440.1 68414.m02132 transcription initiation factor IID
(TFIID) subunit A family protein similar to SP|Q16514
Transcription initiation factor TFIID 20/15 kDa subunits
(TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
profile PF03847: Transcription initiation factor TFIID
subunit A
Length = 683
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = +1
Query: 298 QERSREQPNFSIDQKNTTELESPINQTETTEPQFSVSKQPSGEISAIPESVSSVNQEHTT 477
Q++ ++QP + Q+ + + INQ + + S + Q S ++ S Q TT
Sbjct: 455 QQQLQQQPQQQMQQQQQQQQQMQINQQQPSPRMLSHAGQKSVSLTG---SQPEATQSGTT 511
Query: 478 EP--QSSMDQEPSNEISATTKSQSSI 549
P SS E +N++ K Q +
Sbjct: 512 TPGGSSSQGTEATNQLLGKRKIQDLV 537
>At1g18700.1 68414.m02333 DNAJ heat shock N-terminal
domain-containing protein low similarity to SP|Q9QYI8
DnaJ homolog subfamily B member 7 Mus musculus; contains
Pfam profile PF00226 DnaJ domain
Length = 700
Score = 28.7 bits (61), Expect = 2.7
Identities = 22/73 (30%), Positives = 35/73 (47%)
Frame = +1
Query: 214 NEETTEQPSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQTETTEP 393
+ +T+QP+ N S + + E +ER REQ ++N E E P + T+ EP
Sbjct: 633 SRSSTQQPAQTNQPSPNQPADNVEEKKKKERKREQ-----RRRNAKEEEVPASITD-NEP 686
Query: 394 QFSVSKQPSGEIS 432
+ +V SG S
Sbjct: 687 KDAVQILSSGSDS 699
>At1g05320.1 68414.m00539 myosin-related similar to non-muscle
myosin II heavy chain (GI:19879404) [Loligo pealei];
ESTs gb|AA042402,gb|ATTS1380 come from this gene
Length = 828
Score = 28.7 bits (61), Expect = 2.7
Identities = 21/113 (18%), Positives = 48/113 (42%), Gaps = 1/113 (0%)
Frame = +1
Query: 151 LSVNQEPFGETIPTIEPEPIDNEETTEQPSSINHASKDIV-LTSEAELANQERSREQPNF 327
L ++ E + +T + N ++ S+ S+ + L S +A +E +
Sbjct: 131 LKISDERYSKTDALLSQALSQNSVLEQKLKSLEELSEKVSELKSALIVAEEEGKKSSIQM 190
Query: 328 SIDQKNTTELESPINQTETTEPQFSVSKQPSGEISAIPESVSSVNQEHTTEPQ 486
Q+ ++LES +NQ+ + + + + A E + +V+ + + E Q
Sbjct: 191 QEYQEKVSKLESSLNQSSARNSELEEDLRIALQKGAEHEDIGNVSTKRSVELQ 243
>At2g11090.1 68415.m01187 expressed protein
Length = 151
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +1
Query: 430 SAIPESVSSVNQEHTTEPQSSMDQEPSNEISATTKSQSSI 549
S+I S +S + +HTT+P+ + PS + S TTK ++I
Sbjct: 56 SSIITSTTSPSLDHTTQPRGRVPSSPSLDHS-TTKPSTTI 94
Score = 27.1 bits (57), Expect = 8.3
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 376 TETTEPQFSVSKQPSGEISAIPESVSSVNQEHTTEPQSSMDQE-PSNEIS 522
T TT P + QP G + + P S + TT P + + P++E S
Sbjct: 60 TSTTSPSLDHTTQPRGRVPSSPSLDHSTTKPSTTIPITRLHTRLPASESS 109
>At4g04400.1 68417.m00634 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 735
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/71 (22%), Positives = 34/71 (47%)
Frame = +1
Query: 211 DNEETTEQPSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQTETTE 390
++ + TE+ S HA+ D VL + + + +Q + I +++ E+ +T TTE
Sbjct: 621 EHGKQTEEASQDGHATDDDVLFASPDGYVTTGNEQQRDIVISERSPEVAENSNKETNTTE 680
Query: 391 PQFSVSKQPSG 423
+ + +G
Sbjct: 681 KEVKGKAKKNG 691
>At3g22790.1 68416.m02873 kinase interacting family protein similar to
kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1694
Score = 27.9 bits (59), Expect = 4.7
Identities = 20/81 (24%), Positives = 32/81 (39%)
Frame = +1
Query: 271 LTSEAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQFSVSKQPSGEISAIPESV 450
L S+ E+ + P+F+ +K E+E I Q T S + +G++ I V
Sbjct: 1554 LKSKLEINEKPGKFTNPDFARVRKQMKEMEEAIFQLANTNEILSNEIEETGDVRDIYRKV 1613
Query: 451 SSVNQEHTTEPQSSMDQEPSN 513
+E M QE N
Sbjct: 1614 VMEKSRIGSEKIEQMQQEMQN 1634
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 27.9 bits (59), Expect = 4.7
Identities = 31/126 (24%), Positives = 48/126 (38%), Gaps = 10/126 (7%)
Frame = +1
Query: 169 PFGETIPTIEPEPI-DNEETTEQPSSIN--HASKDIVLTSEAELANQERSR-------EQ 318
P G T PEPI D+E+T + A VL EAE + E+S E
Sbjct: 332 PSGTVKDTSVPEPIWDDEDTKTFYECLPDLRAFVPAVLLGEAEPKSNEQSAKAKEKLSES 391
Query: 319 PNFSIDQKNTTELESPINQTETTEPQFSVSKQPSGEISAIPESVSSVNQEHTTEPQSSMD 498
+ ++ + TTE + ++ + S ++QP + E +E E S
Sbjct: 392 SSEVVENQQTTEDTTEVSADSASMDDRSNAEQPKEKEEVEKEKAKDTKKEKGKEKDSEKK 451
Query: 499 QEPSNE 516
E E
Sbjct: 452 MEHEKE 457
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +2
Query: 359 NHRLIKQKQQNHNFQ*ANSHLEK--FQQYQSQFHP 457
N RLIKQ+QQ Q + +++ QQ+ S +HP
Sbjct: 3 NQRLIKQQQQQQQQQHQQAMIQQAMMQQHPSLYHP 37
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +2
Query: 359 NHRLIKQKQQNHNFQ*ANSHLEK--FQQYQSQFHP 457
N RLIKQ+QQ Q + +++ QQ+ S +HP
Sbjct: 3 NQRLIKQQQQQQQQQHQQAMIQQAMMQQHPSLYHP 37
>At2g43210.2 68415.m05371 UBX domain-containing protein contains
Pfam profile PF00789: UBX domain
Length = 531
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 391 PQFSVSKQPSGEISAIPESVSSVNQEHTTEPQSSMDQEPSNEISATTKSQ 540
P + S QPS S + + ++ N + T + EPSN + TTK+Q
Sbjct: 164 PSTASSVQPSETKSTVTSASTTENNDGTVAVKGKESAEPSN-LCDTTKNQ 212
>At2g43210.1 68415.m05370 UBX domain-containing protein contains
Pfam profile PF00789: UBX domain
Length = 531
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 391 PQFSVSKQPSGEISAIPESVSSVNQEHTTEPQSSMDQEPSNEISATTKSQ 540
P + S QPS S + + ++ N + T + EPSN + TTK+Q
Sbjct: 164 PSTASSVQPSETKSTVTSASTTENNDGTVAVKGKESAEPSN-LCDTTKNQ 212
>At5g51530.1 68418.m06390 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1149
Score = 27.1 bits (57), Expect = 8.3
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = +1
Query: 286 ELANQERSREQPNFSIDQKNTTELESPINQTETTEPQFSVSKQPSGEISAIPESVSSVNQ 465
E + RS+++ N +++N+T L +P+++T EP SV +P + + +
Sbjct: 712 EEEKKSRSKKKKN---NKRNSTSLSTPLDKTVEHEP--SVDLEP-----GVTSPSLKIVK 761
Query: 466 EHTTEPQSSMDQEPSN-EISATTKSQ 540
E EP+ + E EIS+ T +Q
Sbjct: 762 EDFMEPEDTRAGERGRLEISSNTDNQ 787
>At5g17910.1 68418.m02100 expressed protein
Length = 1342
Score = 27.1 bits (57), Expect = 8.3
Identities = 27/121 (22%), Positives = 47/121 (38%)
Frame = +1
Query: 175 GETIPTIEPEPIDNEETTEQPSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTE 354
GE + +E +P ++ N + VL A + +P I + +E
Sbjct: 1143 GEIMCAVETKPSESSVDESSIDETNVITTSDVLPVVARSLEEFPQPSEPKEGISMEIISE 1202
Query: 355 LESPINQTETTEPQFSVSKQPSGEISAIPESVSSVNQEHTTEPQSSMDQEPSNEISATTK 534
S + TE T P G ++ I E V+ + TTE + ++E ++ TK
Sbjct: 1203 --SVMIPTEATGP---------GNVTVIDEVVTEETKAETTEKEEEGEEEEESKPKEITK 1251
Query: 535 S 537
S
Sbjct: 1252 S 1252
>At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 923
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 154 SVNQEPFGETIPTIEPEPIDNEETTEQPSSIN 249
S N+ GE+ P PIDN + E S IN
Sbjct: 63 SANECSTGESSEAPRPGPIDNHDIIESDSDIN 94
>At3g51640.1 68416.m05663 expressed protein
Length = 826
Score = 27.1 bits (57), Expect = 8.3
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +1
Query: 274 TSEAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQFSVSKQPSGEISAIPESVS 453
T+ ++ + SRE P S Q +P++ T + S + QP+ + S +P VS
Sbjct: 473 TNNPVVSEPKPSRE-PKKSWHQLFARSTPAPVSSNVNTISRPSTNPQPNVQSSQVPSQVS 531
Query: 454 SV 459
S+
Sbjct: 532 SI 533
>At3g17690.1 68416.m02258 cyclic nucleotide-binding transporter 2 /
CNBT2 (CNGC19) identical to cyclic nucleotide-binding
transporter 2 (CNBT2) GI:8131900 from [Arabidopsis
thaliana]; member of the cyclic nucleotide-gated channel
family (CNGC)- see PMID:11500563
Length = 743
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 352 ELESPINQTETTEPQFSVSKQPSGEISA 435
++ PI+ T TEP FS S Q S + S+
Sbjct: 50 QMSGPIHSTRRTEPLFSPSPQESPDSSS 77
>At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 551
Score = 27.1 bits (57), Expect = 8.3
Identities = 18/90 (20%), Positives = 40/90 (44%)
Frame = +1
Query: 274 TSEAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQFSVSKQPSGEISAIPESVS 453
T+ + +++ ++ P S ++ L + ++ S S S +S+ P+S S
Sbjct: 413 TTSSPVSSSAKTTSTPVSSSPDTSSFLLSLSLAADSSSSDSDSSSPDSSSSVSSSPDSSS 472
Query: 454 SVNQEHTTEPQSSMDQEPSNEISATTKSQS 543
SV+ + S + S+ +S++ S S
Sbjct: 473 SVSSSPDSYSSFSSSPDSSSSVSSSLFSSS 502
>At1g77620.1 68414.m09037 expressed protein
Length = 1151
Score = 27.1 bits (57), Expect = 8.3
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Frame = +1
Query: 145 QLLSVNQEPFGETIPTIEPEPIDNEETTEQPSSINHASKD--IVLTSEAELANQ-ERSRE 315
Q LS +Q + + ++E T+ SI+ KD ++ + L++ ++
Sbjct: 706 QPLSFSQPNRRRKLNVVMSSDSEDEPLTDIRVSISQHQKDDRLIFQEDGTLSSYWPDMQK 765
Query: 316 QPNFSIDQKNTTELESPINQTETTEPQFSVSKQPSGEISAIPES 447
+ N D LE+ Q ET++ + S EIS +PES
Sbjct: 766 ETNPLADPSRAEILEAACYQYETSKFSYINEVSQSVEISCVPES 809
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.297 0.115 0.292
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,730,069
Number of Sequences: 28952
Number of extensions: 208864
Number of successful extensions: 370
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 17 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 44 (22.0 bits)
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