Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0482
(441 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 91 7e-20
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 62 4e-11
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 51 7e-08
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 42 4e-05
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 38 7e-04
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c... 37 0.002
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 36 0.002
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 35 0.005
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 34 0.011
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 32 0.034
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 30 0.14
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 30 0.14
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb... 27 1.7
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 27 1.7
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 26 3.0
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 25 5.2
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 25 5.2
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p... 25 6.8
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 25 6.8
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 24 9.0
SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|... 24 9.0
SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch... 24 9.0
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 91.1 bits (216), Expect = 7e-20
Identities = 45/77 (58%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Frame = +2
Query: 212 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQG 388
F DF+ GG+SAAVSKTA APIERVKLL+Q Q + + RYKGI + F R E+G
Sbjct: 27 FFFDFMMGGVSAAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEG 86
Query: 389 LLSFWRGNFANVIRYFP 439
++S WRGN ANV+RYFP
Sbjct: 87 VISLWRGNTANVLRYFP 103
Score = 32.3 bits (70), Expect = 0.034
Identities = 17/72 (23%), Positives = 35/72 (48%)
Frame = +2
Query: 212 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 391
FA + +GG + A S V ++ + L S + ++++ G+VD + + + GL
Sbjct: 132 FAGNLASGGAAGAASLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGL 191
Query: 392 LSFWRGNFANVI 427
+RG +V+
Sbjct: 192 RGLYRGFGPSVV 203
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 62.1 bits (144), Expect = 4e-11
Identities = 29/71 (40%), Positives = 47/71 (66%)
Frame = +2
Query: 227 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 406
L+GG++A VS+TAV+P+ER+K++ QVQ+ ++ Y + V+I +GL+ F+R
Sbjct: 25 LSGGVAATVSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFR 77
Query: 407 GNFANVIRYFP 439
GN N +R FP
Sbjct: 78 GNGTNCLRAFP 88
Score = 41.9 bits (94), Expect = 4e-05
Identities = 26/86 (30%), Positives = 41/86 (47%)
Frame = +2
Query: 182 KMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDA 361
K + AD AF K FL GG + + +T P + ++ QV + YK I A
Sbjct: 217 KFFSNADLTAFQKLFL-GGFTGIIGQTLTFPADVLRRRFQVNRIP---GIGHNYKNIKSA 272
Query: 362 FVRIPKEQGLLSFWRGNFANVIRYFP 439
I K +G+ F+RG +N+++ P
Sbjct: 273 IFHIYKTEGINGFFRGYSSNMLKIIP 298
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 51.2 bits (117), Expect = 7e-08
Identities = 28/74 (37%), Positives = 42/74 (56%)
Frame = +2
Query: 218 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLS 397
K +AGG + V+K+ VAP++RVK+L Q H S + A R+ G+ A I GL
Sbjct: 19 KSGIAGGTAGCVAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGLHG 77
Query: 398 FWRGNFANVIRYFP 439
++G+ A + R FP
Sbjct: 78 LYQGHTATLYRVFP 91
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 41.9 bits (94), Expect = 4e-05
Identities = 22/80 (27%), Positives = 42/80 (52%)
Frame = +2
Query: 200 DPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPK 379
DP F++GGI+ VS+T AP++R+K++L + + + + ++ +
Sbjct: 123 DPKNNVGYFISGGIAGIVSRTCTAPLDRLKVML-ISDTGSKPSPKYPFATLLHTTKVLWN 181
Query: 380 EQGLLSFWRGNFANVIRYFP 439
G+ SF+ GN NV++ P
Sbjct: 182 RNGIRSFFVGNGINVLKVMP 201
Score = 37.5 bits (83), Expect = 0.001
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = +2
Query: 233 GGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGN 412
G +S + T V P+ ++ LQ Q S A Y G +D F + K +G ++G
Sbjct: 342 GALSGSTGATIVFPLNVIRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKGL 398
Query: 413 FANVIRYFP 439
N+++ P
Sbjct: 399 SPNLLKVAP 407
Score = 33.9 bits (74), Expect = 0.011
Identities = 18/73 (24%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +2
Query: 224 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVR-IPKEQGLLSF 400
+LAGG++ +V++ + P++ +K +Q +S+ Q K I+ + + + K G+ +
Sbjct: 232 YLAGGMAGSVAQMFIYPVDTLKFRIQCSDLSR----GQHGKSIILSNAKELYKSVGIRGY 287
Query: 401 WRGNFANVIRYFP 439
+RG ++ FP
Sbjct: 288 YRGVLVGILGMFP 300
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 37.9 bits (84), Expect = 7e-04
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +2
Query: 209 AFAKDFLAGGISAAVSKTAVA-PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQ 385
+F KDFLA G+S V++ V P + VK+ LQ Q I Y +D +I K +
Sbjct: 16 SFTKDFLA-GVSGGVAQVLVGQPFDCVKVRLQSQSNVSPI-----YNNALDCVKKISKNE 69
Query: 386 GLLSFWRG 409
GL +F++G
Sbjct: 70 GLAAFYKG 77
Score = 34.7 bits (76), Expect = 0.006
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +2
Query: 203 PVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKE 382
PV + +++G IS + V P+E V++ LQ+Q K + Y G D +I +
Sbjct: 109 PVTMPQYYVSGAISGLANSFLVGPVEHVRIRLQIQ-TGKNVL----YHGPWDCIKKISSQ 163
Query: 383 QGLLSFWRG 409
GL +G
Sbjct: 164 YGLSGIMKG 172
>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 36.7 bits (81), Expect = 0.002
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +2
Query: 224 FLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSF 400
FL+GG++A + T P E +K Q+Q ++K + + YK + AF I + +G+
Sbjct: 27 FLSGGLAACGAVTLTNPFEVIKTRFQLQGQLTKLDPSKRIYKSVGQAFSLIARHEGIRGL 86
Query: 401 WRG 409
RG
Sbjct: 87 QRG 89
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 36.3 bits (80), Expect = 0.002
Identities = 20/61 (32%), Positives = 35/61 (57%)
Frame = +2
Query: 227 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 406
++GG+S A++ + P++ VK LLQ + S I ++ KG +D I G+ SF++
Sbjct: 209 ISGGLSGAIASSLTTPLDVVKTLLQTRG-SSSIPEVRKCKGSLDVVRFIYNYGGIPSFFK 267
Query: 407 G 409
G
Sbjct: 268 G 268
Score = 34.3 bits (75), Expect = 0.008
Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +2
Query: 227 LAGGISAAVSKTAVAPIERVKLLLQVQH-VSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 403
LAG S + + + P++ +K +Q+ + VS+ ++ + IV++ ++I +G+ S W
Sbjct: 24 LAGAFSGILEHSVMYPVDAIKTRMQMLNGVSRSVSGN-----IVNSVIKISSTEGVYSLW 78
Query: 404 RG 409
RG
Sbjct: 79 RG 80
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 35.1 bits (77), Expect = 0.005
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +2
Query: 224 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 403
FL G ++ ++ PI+ VK +Q ++A + YK + +I + GLL FW
Sbjct: 207 FLVGSVAGIITVYCTQPIDTVKSRMQ------SLSASKEYKNSIHCAYKILTQDGLLRFW 260
Query: 404 RG 409
G
Sbjct: 261 SG 262
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 33.9 bits (74), Expect = 0.011
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +2
Query: 215 AKDFLAGGISAAVSKTAVAPIERVKLLLQ-VQHVSKQIAADQRYKGIVDAFVRIPKEQGL 391
A L G + V P E +K+ LQ V++ SK Y G VD F +I K++ +
Sbjct: 105 ALSILTGSCAGFTETFVVVPFELMKIRLQDVKNASK-------YNGTVDCFTKIVKQERI 157
Query: 392 LSFWRGNFANVIRY 433
L+ + G A + R+
Sbjct: 158 LALYNGFEATMWRH 171
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 32.3 bits (70), Expect = 0.034
Identities = 18/69 (26%), Positives = 34/69 (49%)
Frame = +2
Query: 227 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 406
LAGGIS+ + + +AP + +K+ +Q+ S + F +++G+ + WR
Sbjct: 21 LAGGISSVICRFMIAPFDVIKIRMQITQSS-----------LRPVFKETVQKEGVRALWR 69
Query: 407 GNFANVIRY 433
GN + Y
Sbjct: 70 GNVVAELLY 78
Score = 28.7 bits (61), Expect = 0.42
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = +2
Query: 227 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 406
L+G I+ A SK + P++ V LQ YK D F+ I + G+ +R
Sbjct: 197 LSGVIAGAGSKAIMFPVDTVVKTLQT--------FPSNYKSFKDCFLSIYRNSGIKGLYR 248
Query: 407 GNFANVIRYFP 439
G ++++ P
Sbjct: 249 GLSVSMLKVAP 259
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 30.3 bits (65), Expect = 0.14
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +2
Query: 161 VKIT*SNKMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQ 301
V +T +N SN P + F+AGG++ + A AP++ VK LQ
Sbjct: 32 VLLTKANNASNERAPPPLSH-FIAGGVAGMLGAIATAPLDVVKTRLQ 77
Score = 28.7 bits (61), Expect = 0.42
Identities = 18/68 (26%), Positives = 33/68 (48%)
Frame = +2
Query: 236 GISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNF 415
GI+ ++ P E V+ L+ S I +Y G++ F + EQG++ + G
Sbjct: 280 GIAKFMAAGIAYPHEVVRTRLRQ---SPSINGTPKYTGLIQCFKLVWMEQGIVGLYGGLT 336
Query: 416 ANVIRYFP 439
A+++R P
Sbjct: 337 AHLLRVVP 344
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 30.3 bits (65), Expect = 0.14
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Frame = +2
Query: 218 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQR---YKGIVDAFVRIPKEQG 388
KD +AGG + S VAP++ VK Q Q + G + + I +G
Sbjct: 7 KDAIAGGAAGLASSLVVAPLDVVKTRKQAQKAFYSTGGGKNTMVLGGTLSSMRTIFHNEG 66
Query: 389 LLSFWRGNFANVIRYFP 439
+ +RG ++ Y P
Sbjct: 67 IAGLYRGVGPMMLGYLP 83
Score = 28.7 bits (61), Expect = 0.42
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 326 AADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 424
A Y DAF +I K +GL +F+RG F ++
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRGLFPSL 257
>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 710
Score = 26.6 bits (56), Expect = 1.7
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Frame = +2
Query: 218 KDFLAGGISAAVSKT--AVAPIERVKLLLQVQHVSK-QIAADQRYKGIVDAFVRIPKEQG 388
KD L GG + V K P + +QV K + A K + D + G
Sbjct: 167 KDHLVGGCADGVIKVWDLSTPNSAIISRMQVDRARKGEAALIWAVKSLRDGTIVSADSSG 226
Query: 389 LLSFWRGNFANVIRYF 436
+ FW G F + + F
Sbjct: 227 AVKFWNGKFFTLSQSF 242
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.6 bits (56), Expect = 1.7
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 61 YEITPNLVFKNQELVFRDPPSACAATPTSTY 153
YE+ N F N PP AC+ TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 3.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 366 TKASTIPL*RWSAAICLLTCCTWSSSLTRSMGATAV 259
T+ + + + WSA I +LT C SLT S+ T +
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSLKLTDI 568
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 25.0 bits (52), Expect = 5.2
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1
Query: 73 PNLVFKNQELVFRDPPSACAATPT 144
P + K E + RDPP A PT
Sbjct: 4 PKRIIKEIETLTRDPPPGIVAAPT 27
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 5.2
Identities = 19/84 (22%), Positives = 33/84 (39%)
Frame = +2
Query: 182 KMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDA 361
K L P + L G ++ + +A+ P++ +K QV Y G +
Sbjct: 13 KTLQLYTPQYYGLCTLGGLLACGTTHSAITPLDLIKCRKQVN--------PNIYPGNIAG 64
Query: 362 FVRIPKEQGLLSFWRGNFANVIRY 433
F I ++GL + G +I Y
Sbjct: 65 FKTILSKEGLRGLYTGGMPTLIGY 88
>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 24.6 bits (51), Expect = 6.8
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +2
Query: 227 LAGGISAAVSKTAVAPIERVKLLLQV--QHVSKQIAADQRYKGIVDAFVRIPKEQGLLSF 400
+AG + +S T V+PIE + +Q H A + + + D + ++G+L+
Sbjct: 141 IAGASARTISATIVSPIELFRTRVQAVGGHYPPGHAREIANE-VFDGLKLMIHQKGILNL 199
Query: 401 WRGNFANVIRYFP 439
W G + R P
Sbjct: 200 WSGVSVTLWRDVP 212
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 24.6 bits (51), Expect = 6.8
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 41 TLC--APVITKLLQISCSKIRS*CFVIPHPRVPQLPPRHIHLV 163
T+C AP + L ++C+K+ C + PR PR+ HL+
Sbjct: 551 TICNIAPFVENLSFVTCAKLMQLCSSLSSPRFLFRNPRN-HLL 592
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 24.2 bits (50), Expect = 9.0
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
Frame = +2
Query: 122 PRVPQLPPRHIHLVKIT*SNKMSNLADPVAFAKDFLAG----GISAAVSKTAVAPI--ER 283
P PQ P ++I ++ +PV FA L + T P
Sbjct: 96 PTTPQTPKTPKRTIQIVTPKSLNRTCNPVPFATRLLQSTPHRQLFPPTPSTPSTPSYNST 155
Query: 284 VKLLLQVQHVSKQIAADQRYKGIVDAFVR 370
KL L+ + S + + K IV++F R
Sbjct: 156 AKLSLRKSYRSAGVVGRENEKSIVESFFR 184
>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 24.2 bits (50), Expect = 9.0
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 91 NQELVFRDPPSACAATPTSTYSPSEDHIIEQNVEP-RRSGR 210
N EL PS+ AATPT + S +I + RSG+
Sbjct: 75 NDELAESSKPSSGAATPTRSAPKSSAGLINSGLRALDRSGK 115
>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 522
Score = 24.2 bits (50), Expect = 9.0
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -1
Query: 336 WSAAICLLTCCTWSSSLTRSMGATAVLETAAEIPPA 229
WSA +CL+ C SL + E A I PA
Sbjct: 152 WSAMVCLMAACRNGPSLLGLRFLAGIFE--ASITPA 185
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,732,669
Number of Sequences: 5004
Number of extensions: 32210
Number of successful extensions: 117
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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