Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0482
         (441 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   155   2e-40
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   155   2e-40
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   6.0  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   6.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.9  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  155 bits (376), Expect = 2e-40
 Identities = 70/85 (82%), Positives = 79/85 (92%)
 Frame = +2

Query: 185 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 364
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 365 VRIPKEQGLLSFWRGNFANVIRYFP 439
           VRIPKEQG LS+WRGN ANVIRYFP
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFP 85



 Score = 27.5 bits (58), Expect = 0.069
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +2

Query: 272 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 430
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  155 bits (376), Expect = 2e-40
 Identities = 70/85 (82%), Positives = 79/85 (92%)
 Frame = +2

Query: 185 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 364
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 365 VRIPKEQGLLSFWRGNFANVIRYFP 439
           VRIPKEQG LS+WRGN ANVIRYFP
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFP 85



 Score = 27.5 bits (58), Expect = 0.069
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +2

Query: 272 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 430
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 386 PAPWGCARRRRR 351
           P P GC RRR R
Sbjct: 1   PGPNGCPRRRGR 12


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 110 VIPHPRVPQLPPRHIHLVKIT 172
           +I  P   +LPP H H   +T
Sbjct: 92  IITIPPTRKLPPLHPHTAMVT 112


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 308 HVSKQIAADQRYKGIVDAFVRIPK 379
           ++ K IAA   +KG+     RIP+
Sbjct: 763 YIQKMIAAAAPFKGMETQDYRIPE 786


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,040
Number of Sequences: 438
Number of extensions: 2280
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)