Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0481
         (611 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   2.7  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   4.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   4.7  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 482 IHVKLRRSNDGLQHTVAGFETLP 550
           + ++LRR +DG       FE LP
Sbjct: 321 VFIQLRRPSDGATSEALPFELLP 343


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -3

Query: 72  DDRLITNLILVKSYTSYR 19
           D+R++ NL+  K Y++Y+
Sbjct: 408 DNRILNNLLDKKPYSTYK 425


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -3

Query: 72  DDRLITNLILVKSYTSYR 19
           D+R++ NL+  K Y++Y+
Sbjct: 300 DNRILNNLLDKKPYSTYK 317


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,706
Number of Sequences: 336
Number of extensions: 2525
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)