Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0481
         (611 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_39538| Best HMM Match : VWA (HMM E-Value=0)                         30   1.7  
SB_58611| Best HMM Match : Collagen (HMM E-Value=0.4)                  29   3.9  
SB_48738| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_46289| Best HMM Match : DUF1690 (HMM E-Value=0.32)                  28   6.9  
SB_8857| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.9  
SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_13920| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3474

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 21/54 (38%), Positives = 29/54 (53%)
 Frame = +3

Query: 417  MGVEKVGDRLFITVPRRRYGIPSTLNYVDLTTDSNTRSPALRPYPSLREGSSLV 578
            +G+     R+F      ++ IPS  +   LTT SN R   L+PY SL EG S+V
Sbjct: 1432 IGLNSFHWRVFYVRNSTKHEIPSLQS--SLTTASNRRGFVLKPY-SLLEGESVV 1482


>SB_39538| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3208

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
 Frame = +2

Query: 125  VDEQESREINRSVRLEATDL*HTRKPVFRRSIRY*H*QKEETN*QRIQ-TRQSESAIKSR 301
            ++++ S+E+NR +  EA+   +       +  +      +E N +  Q  +Q++      
Sbjct: 1090 INQEASQEVNREINQEASQEVNQEASQMVKQAQINQEASQEVNQEASQMVKQAQIDQGVS 1149

Query: 302  RSTPQAELESIQTR-NRETIREACRERNRKILRSI 403
            ++  QA+ + +    N+ET +E  RE N+K  R I
Sbjct: 1150 QAVSQADSQEVSREVNQETNQEVNREINQKANRGI 1184


>SB_58611| Best HMM Match : Collagen (HMM E-Value=0.4)
          Length = 773

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 323 LESIQTRNRETIREACRERNRKILR 397
           + ++ TRNRE  R + R RNRK+ R
Sbjct: 513 ISTLLTRNRERRRSSRRRRNRKVCR 537


>SB_48738| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -2

Query: 67 SINN*FNFSEVLYVLSMSCSP 5
          S N  FN  EV++VLS SCSP
Sbjct: 10 SANIVFNILEVIHVLSNSCSP 30


>SB_46289| Best HMM Match : DUF1690 (HMM E-Value=0.32)
          Length = 947

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +3

Query: 405  NNVPMGVEKVGDRLFIT-VPRRRYGIPSTLNYVDLTTDSNTRSPALRPYPSLREGSSLVS 581
            NNV   V +   R+  T +PR   G   ++    + T S+  S +  P+P++R  S  +S
Sbjct: 837  NNVGADVTRKAARVLRTSIPRSGSGNSYSVMATTIPTSSSATSDSSSPHPAMRTSSFTIS 896


>SB_8857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 366 PVENETGRFFVQYNNVPMGVEKVGDRLFITV 458
           P EN  G F  ++  VP G +K+G R+ + +
Sbjct: 193 PHENVKGEFTKRWEGVPSGEKKLGRRILLEI 223


>SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1267

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 364 SLSRTKQEDSSFNITMCQWALKRLATDCSLQSLDGDMVY 480
           ++S T++     ++ + QW  +R  T   LQSL G +V+
Sbjct: 598 TMSVTRERLDELSVLLSQWKDRRSCTKRQLQSLIGKLVF 636


>SB_13920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
 Frame = +3

Query: 378 ETGRFFVQY---NNVPMGVEKVGDRLFITVPRRRYGIPSTLNYVDLTTD-----SNTRSP 533
           ET R  V+Y   NNVP  VE++ +++F   P   +G  +  +  D TT+     S  +S 
Sbjct: 11  ETKRQAVEYFNSNNVPKHVEELLNKMFKEKPEDIFGYMAEQSESDPTTEKIDELSGKKSS 70

Query: 534 ALRPYPSLREGSSLVS 581
             R   SL +  S+V+
Sbjct: 71  QSRESVSLSKKQSVVA 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,900,659
Number of Sequences: 59808
Number of extensions: 312665
Number of successful extensions: 773
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)