Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0481
(611 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g24310.1 68417.m03490 expressed protein contains Pfam profile... 28 5.6
At5g50130.1 68418.m06209 short-chain dehydrogenase/reductase (SD... 27 7.4
At5g18270.2 68418.m02148 no apical meristem (NAM) family protein... 27 7.4
At5g18270.1 68418.m02147 no apical meristem (NAM) family protein... 27 7.4
At4g31830.1 68417.m04523 expressed protein 27 7.4
At1g71530.2 68414.m08270 protein kinase family protein contains ... 27 9.8
At1g71530.1 68414.m08269 protein kinase family protein contains ... 27 9.8
At1g07840.2 68414.m00851 leucine zipper factor-related similar t... 27 9.8
At1g07840.1 68414.m00850 leucine zipper factor-related similar t... 27 9.8
>At4g24310.1 68417.m03490 expressed protein contains Pfam profile
PF05078: Protein of unknown function (DUF679)
Length = 213
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 411 VPMGVEKVGDRLFITVPRRRYGI 479
VPMGV + LF+ P RR+GI
Sbjct: 180 VPMGVGVICGMLFLVFPARRHGI 202
>At5g50130.1 68418.m06209 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
Short-chain dehydrogenase/reductase (SDR) superfamily
Length = 339
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 458 DCNEQSVANLFNAHWHIVILNEESSCFVLDRLHEW 354
DCNE + ++L N + + L +S + D LHE+
Sbjct: 294 DCNETNCSDLANDEYVALKLCTQSRALIHDHLHEF 328
>At5g18270.2 68418.m02148 no apical meristem (NAM) family protein
contains Pfam PF02365 : No apical meristem (NAM)
protein; similar to cup-shaped cotyledon CUC2
(GI:1944132) [Arabidopsis thaliana]
Length = 335
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -1
Query: 191 YVISQLLPGEHFG*FPDFPAHQLTGSSDGEQKNNRKTFILM 69
Y IS + HF + HQ+ GS+ G NN I M
Sbjct: 233 YDISSPIQPHHFNSYQSIFNHQVFGSASGSTYNNNNEMIKM 273
>At5g18270.1 68418.m02147 no apical meristem (NAM) family protein
contains Pfam PF02365 : No apical meristem (NAM)
protein; similar to cup-shaped cotyledon CUC2
(GI:1944132) [Arabidopsis thaliana]
Length = 335
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -1
Query: 191 YVISQLLPGEHFG*FPDFPAHQLTGSSDGEQKNNRKTFILM 69
Y IS + HF + HQ+ GS+ G NN I M
Sbjct: 233 YDISSPIQPHHFNSYQSIFNHQVFGSASGSTYNNNNEMIKM 273
>At4g31830.1 68417.m04523 expressed protein
Length = 100
Score = 27.5 bits (58), Expect = 7.4
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = -2
Query: 535 AGDRVLESVVRST*FNVDGIPYLRLGTVMNNLSPTFSTPIGTLLY*TKNLPVSFSTGFTN 356
AG+ +T + +G+ + V ++ P S P G +L+ +NLP S++T
Sbjct: 2 AGEEDWRKTADTTKMSSEGV---KAAGVESSKRPPGSNP-GGVLHQRRNLPYSYTTMALA 57
Query: 355 GLTISG 338
GL ISG
Sbjct: 58 GLAISG 63
>At1g71530.2 68414.m08270 protein kinase family protein contains
Serine/Threonine protein kinases active-site signature,
PROSITE:PS00108
Length = 463
Score = 27.1 bits (57), Expect = 9.8
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = +3
Query: 297 RGDLPLRPSWNLFRPEIVRPFVKPVENETGRFFVQYNNVPMGVEKVGDRLFITVPRRRYG 476
R LPL S F+P P+ KPV ET +N+ P + ++L P +R
Sbjct: 374 RATLPLATS---FKPS--HPY-KPVLAET------FNHFPSSALMLINKLLAIEPEKRGS 421
Query: 477 IPSTLNYVDLTTDSNTRSPALRP-YPSLRE 563
STL TT+ +P+ P YP +E
Sbjct: 422 AASTLRSEFFTTEPLPANPSNLPRYPPSKE 451
>At1g71530.1 68414.m08269 protein kinase family protein contains
Serine/Threonine protein kinases active-site signature,
PROSITE:PS00108
Length = 463
Score = 27.1 bits (57), Expect = 9.8
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = +3
Query: 297 RGDLPLRPSWNLFRPEIVRPFVKPVENETGRFFVQYNNVPMGVEKVGDRLFITVPRRRYG 476
R LPL S F+P P+ KPV ET +N+ P + ++L P +R
Sbjct: 374 RATLPLATS---FKPS--HPY-KPVLAET------FNHFPSSALMLINKLLAIEPEKRGS 421
Query: 477 IPSTLNYVDLTTDSNTRSPALRP-YPSLRE 563
STL TT+ +P+ P YP +E
Sbjct: 422 AASTLRSEFFTTEPLPANPSNLPRYPPSKE 451
>At1g07840.2 68414.m00851 leucine zipper factor-related similar to
charged amino acid rich leucine zipper factor-1
(GI:12061569) {Mus musculus}
Length = 312
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +3
Query: 336 RPEIVRPFVKPVENETGRFFVQYNNVPMGVEKVGDRLFITVPRRR 470
RPE +R + NE RF QY +K + LF PR +
Sbjct: 217 RPEEIRDYYGVESNEQKRFMAQYER----QQKAEEELFTRAPRTK 257
>At1g07840.1 68414.m00850 leucine zipper factor-related similar to
charged amino acid rich leucine zipper factor-1
(GI:12061569) {Mus musculus}
Length = 312
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +3
Query: 336 RPEIVRPFVKPVENETGRFFVQYNNVPMGVEKVGDRLFITVPRRR 470
RPE +R + NE RF QY +K + LF PR +
Sbjct: 217 RPEEIRDYYGVESNEQKRFMAQYER----QQKAEEELFTRAPRTK 257
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,743,936
Number of Sequences: 28952
Number of extensions: 223535
Number of successful extensions: 591
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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