Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0480
         (682 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    27   0.11 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    27   0.11 
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           26   0.33 
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     24   1.0  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    24   1.0  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    24   1.0  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           24   1.0  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    24   1.0  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    22   4.0  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    22   4.0  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   5.3  
AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical pro...    22   5.3  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   7.1  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   7.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   7.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   7.1  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   7.1  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    21   7.1  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   7.1  
AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A prot...    21   7.1  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    21   7.1  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 504 RREARLRFAVCGQRQRFEMGNRSGTSRNKISNKTKGRGRQRGSG 635
           RR   +  A+C   ++ ++  ++   + K  NKTKG G   G G
Sbjct: 270 RRRIEIAHALCLTERQIKIWFQNRRMKWKKENKTKGEGGSEGGG 313


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 504 RREARLRFAVCGQRQRFEMGNRSGTSRNKISNKTKGRGRQRGSG 635
           RR   +  A+C   ++ ++  ++   + K  NKTKG G   G G
Sbjct: 272 RRRIEIAHALCLTERQIKIWFQNRRMKWKKENKTKGEGGSEGGG 315


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
 Frame = +1

Query: 118 TNKVVAYEAHKIHKHS-SKNHYIQRK*PYGAVCAPKVFSLAFSVIKKFMHEYTISKIKIF 294
           T +++ YEA  +  H  S    +     +       +  ++ S+      E ++S   +F
Sbjct: 152 TYQIIPYEALNVDDHILSDPSLMDADLEFKGAQDLSLLHVSDSLSPGIYSEQSLSPDTVF 211

Query: 295 GTDTKKWQAQVLNLIDKDQLPVHYGGTMVD 384
           G D K     V++L ++++LP  +   ++D
Sbjct: 212 GDDGKSEDVPVISLKNENELPQQHKTNVMD 241


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 270 HHIEDQDIRYGY 305
           HHI+ Q ++YGY
Sbjct: 53  HHIQQQQLQYGY 64


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 270 HHIEDQDIRYGY 305
           HHI+ Q ++YGY
Sbjct: 53  HHIQQQQLQYGY 64


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 185 KESDRMVRFVHPKXXXXXXXXXKNLCTNTPYRRSRY 292
           KE +RMV+ +H K         ++ C      RSR+
Sbjct: 192 KEIERMVQIIHKKFSSIQMQLKQSTCEAVMILRSRF 227


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 270 HHIEDQDIRYGY 305
           HHI+ Q ++YGY
Sbjct: 53  HHIQQQQLQYGY 64


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 270 HHIEDQDIRYGY 305
           HHI+ Q ++YGY
Sbjct: 53  HHIQQQQLQYGY 64


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 441 FRHFPTWLHN*TTPRVAIFIDHRPAVVNR 355
           F    T  +  +TP V I+I H+P ++ R
Sbjct: 52  FERIRTIYNQFSTPYVGIYIFHQPVLLIR 80


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 45  RKQRIFFIKIMFSDEAHFQLGGYVN 119
           RK+ + F + M   +  F++GG++N
Sbjct: 344 RKELLLFAEQMGQRQVAFKVGGFLN 368


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 303 IRTEYLDLRYGVFVHK 256
           I TE+ D  YG+F H+
Sbjct: 94  ISTEHCDWLYGIFGHE 109


>AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical
           protein protein.
          Length = 148

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +2

Query: 260 CTNTPYRRSRYS 295
           C+N+P R++RY+
Sbjct: 62  CSNSPLRKARYT 73


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/47 (19%), Positives = 19/47 (40%)
 Frame = +3

Query: 63  FIKIMFSDEAHFQLGGYVNKQSCRIRGSQNPQTLFEKPLHPKKVTVW 203
           F+++  +    F+    V         +Q+P  ++  P  P K + W
Sbjct: 68  FLEMTLAHHCRFKFSSSVGWSPAGHEEAQSPHRIYMHPESPSKGSHW 114


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = +1

Query: 445 YYSKNTSEKQKNYNKVTIKTGEKHVLDLL 531
           +Y      +   YN+    TG  HV+ L+
Sbjct: 500 FYKPEDIFRPNTYNRFLAATGGDHVISLI 528


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/38 (26%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 311  FFVSVPNILIFDMVYSCINF-LITENAREKTLGAQTAP 201
            ++V+VP++ +  ++YS  N   ++   RE T+  +  P
Sbjct: 1008 YYVTVPSMYLLLVIYSVFNMNNVSWGTREVTVVPKPDP 1045


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/38 (26%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 311  FFVSVPNILIFDMVYSCINF-LITENAREKTLGAQTAP 201
            ++V+VP++ +  ++YS  N   ++   RE T+  +  P
Sbjct: 1008 YYVTVPSMYLLLVIYSVFNMNNVSWGTREVTVVPKPDP 1045


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 478 SSVFHWYSSSSNI*ALSHLASQLNYTSGRHFHRPSS 371
           SS+    S S++  A  H  +  N+T+  H H  SS
Sbjct: 262 SSLITTPSPSASPLAYQHEYNSFNWTANGHGHNTSS 297


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 418 SQLNYTSGRHFH 383
           S +NYT G+H H
Sbjct: 66  SMVNYTLGQHHH 77


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 418 SQLNYTSGRHFH 383
           S +NYT G+H H
Sbjct: 125 SMVNYTLGQHHH 136


>AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A
           protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 418 SQLNYTSGRHFH 383
           S +NYT G+H H
Sbjct: 66  SMVNYTLGQHHH 77


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 418 SQLNYTSGRHFH 383
           S +NYT G+H H
Sbjct: 125 SMVNYTLGQHHH 136


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,614
Number of Sequences: 336
Number of extensions: 4135
Number of successful extensions: 21
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)