Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0480
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    28   1.4  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.5  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    27   2.5  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    27   3.3  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    26   4.4  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    26   4.4  
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha...    26   4.4  

>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 323 CACHFFVSVPNILIFDMVYSCINFLI 246
           C C+  +S P IL+F ++Y  I FL+
Sbjct: 645 CLCYSIIS-PLILVFGLIYFIIGFLV 669


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 634 PLPRCLPRPFVLFE-ILFRDVPLRFPISKRCRCPHTAN 524
           PLPRC PR  V  E  +   + ++      CR P +AN
Sbjct: 93  PLPRCTPRTIVTQEGSISYKLTVKLYTEDDCRMPKSAN 130


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 232 LAFSVIKKFMHEY--TISKIKIFGTDTKKWQAQVLNLIDKDQLPVH 363
           + FS I+K+  E   T+S++++   D K++     NL+  +   VH
Sbjct: 128 IRFSKIEKYTKETRPTVSEVRVSTKDKKEYSMNTSNLVQSNPPKVH 173


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 14/70 (20%)
 Frame = -2

Query: 633 HFLVAFLVPS----FYLKFYFVMFHSDFPF--------QN--AVVVRTQQI*DVLLSGLY 496
           +F +  L+PS     Y++ YF  FH  FPF        +N  A  +R+  +   L +G+ 
Sbjct: 132 YFTILPLIPSDFLEHYIEGYFEWFHPVFPFIHQASFNSENVAASFLRSLVVIACLCTGIE 191

Query: 495 GDFIVILLFF 466
            DF + LLF+
Sbjct: 192 SDFSMALLFW 201


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 493 TIKTGEKHVL-DLLCADNDSVLKWEIGVEHHEIKFQIKRRDEE 618
           T++   K +L   L  +++S+L W++ V+   IKF I  +  +
Sbjct: 3   TVEIRSKSLLIQWLTVESNSLLSWQLHVKRKSIKFDIYHKKND 45


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 285 QDIRYGYKEMAGASIEPDR 341
           QD  YGY+E++G+S   D+
Sbjct: 612 QDANYGYRELSGSSFYKDQ 630


>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 453

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +3

Query: 450 LEEYQ*KTEELQ*SHHKD----RREARLRFAVCGQRQRFEMGNRSGTSRNKISNKTKGRG 617
           L EY+  +E     + K+    +R+A L     G  +R +  N      N ISNK K  G
Sbjct: 381 LSEYEHVSENKMLEYIKEVTDAKRQASLEMIDRGFGERRQKRNEKRLMANGISNKLKNSG 440

Query: 618 RQR 626
           R++
Sbjct: 441 RKK 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,903,425
Number of Sequences: 5004
Number of extensions: 63537
Number of successful extensions: 165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)