Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0480
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0040 + 14262137-14262182,14262456-14262738,14262824-142629... 43 3e-04
09_04_0537 + 18410201-18410207,18410301-18410586,18410674-184107... 41 0.001
02_01_0264 - 1748883-1748888,1748943-1749017,1749453-1749868,175... 41 0.001
05_06_0271 + 26836396-26836610,26836793-26836872,26837573-268376... 40 0.001
02_01_0263 + 1743661-1743694,1744939-1745236,1745318-1745417,174... 38 0.010
08_02_0290 + 15383473-15383669,15385057-15385267,15386389-153864... 37 0.013
03_05_0960 + 29221087-29221091,29221370-29221468,29221773-292218... 36 0.030
01_06_0403 - 29060712-29060732,29061260-29061334,29061596-290617... 36 0.030
09_02_0102 - 4295329-4295366,4295622-4295702,4295946-4296252,429... 32 0.48
09_03_0040 + 11816056-11819069,11819837-11820428 31 1.1
05_03_0218 - 10437377-10437622,10437896-10438141,10438528-104386... 31 1.1
10_01_0115 - 1426573-1426590,1426838-1426912,1427106-1427464,142... 30 2.0
11_01_0464 + 3597568-3600244,3600345-3600742 29 4.5
10_08_0074 - 14668625-14669797 29 4.5
06_03_0709 - 23759162-23759455,23759681-23759761,23759847-237599... 28 6.0
08_02_1047 - 23927822-23928112,23928736-23928981,23929119-239293... 28 7.9
08_02_0464 - 17463066-17465136,17470821-17471650 28 7.9
01_01_1135 - 9003823-9004182,9004308-9004367,9004441-9004683,900... 28 7.9
>02_03_0040 +
14262137-14262182,14262456-14262738,14262824-14262923,
14263027-14263293,14263378-14263455,14263552-14263653,
14263731-14263780,14263864-14263957,14264060-14264161,
14264855-14264960,14265056-14265414,14265572-14265646,
14265890-14265907
Length = 559
Score = 42.7 bits (96), Expect = 3e-04
Identities = 21/56 (37%), Positives = 33/56 (58%)
Frame = +1
Query: 226 FSLAFSVIKKFMHEYTISKIKIFGTDTKKWQAQVLNLIDKDQLPVHYGGTMVDENG 393
F L +S +K F+ T +KI + G K+Q+++L +ID +LP +GGT E G
Sbjct: 272 FRLLWSTVKSFLDPKTTAKIHVLGN---KYQSKLLEVIDASELPEFFGGTCQCEGG 324
>09_04_0537 +
18410201-18410207,18410301-18410586,18410674-18410773,
18410881-18411147,18411286-18411363,18411444-18411545,
18411628-18411677,18411793-18411889,18412248-18412361,
18412495-18412666,18412865-18413217,18413812-18413898,
18413981-18414001
Length = 577
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/83 (31%), Positives = 44/83 (53%)
Frame = +1
Query: 145 HKIHKHSSKNHYIQRK*PYGAVCAPKVFSLAFSVIKKFMHEYTISKIKIFGTDTKKWQAQ 324
H++ K S ++Y + V A F L ++ +K F+ T SKI + GT+ +Q++
Sbjct: 234 HRMQKIDS-DYYPETLHQMYVVNAGSGFKLIWNSVKGFLDPKTSSKIHVLGTN---YQSR 289
Query: 325 VLNLIDKDQLPVHYGGTMVDENG 393
+L +IDK +LP GG+ G
Sbjct: 290 LLEVIDKSELPEFLGGSCTCSEG 312
>02_01_0264 -
1748883-1748888,1748943-1749017,1749453-1749868,
1750095-1750215,1750423-1750533,1750636-1750737,
1750896-1750989,1751145-1751194,1751323-1751424,
1751794-1751871,1751999-1752028,1752322-1753050
Length = 637
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/56 (35%), Positives = 32/56 (57%)
Frame = +1
Query: 226 FSLAFSVIKKFMHEYTISKIKIFGTDTKKWQAQVLNLIDKDQLPVHYGGTMVDENG 393
F L ++ +K F+ T +KI + G K+Q+++L +ID +LP GGT E G
Sbjct: 293 FRLLWNTVKSFLDPKTTAKIHVLGN---KYQSKLLEVIDPSELPEFLGGTCTCEGG 345
>05_06_0271 +
26836396-26836610,26836793-26836872,26837573-26837641,
26837694-26837985,26838303-26838399,26838478-26838744,
26838832-26838909,26839019-26839120,26839251-26839300,
26839383-26839482,26839645-26839743,26839840-26839968,
26840319-26840427,26840652-26841055,26841140-26841280,
26841373-26841393
Length = 750
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/49 (36%), Positives = 32/49 (65%)
Frame = +1
Query: 226 FSLAFSVIKKFMHEYTISKIKIFGTDTKKWQAQVLNLIDKDQLPVHYGG 372
F + +S +K F+ T SKI + G+ K+Q ++L +ID+++LP +GG
Sbjct: 380 FKMLWSTVKSFLDPKTASKIHVLGS---KYQNKLLEIIDENELPEFFGG 425
>02_01_0263 +
1743661-1743694,1744939-1745236,1745318-1745417,
1745500-1745766,1745859-1745936,1746023-1746124,
1746205-1746254,1746347-1746446,1746550-1746648,
1746742-1746858,1747187-1747313,1747396-1747793,
1747900-1748004
Length = 624
Score = 37.5 bits (83), Expect = 0.010
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Frame = +1
Query: 226 FSLAFSVIKKFMHEYTISKIKIFGTDTKKWQAQVLNLIDKDQLPVHYGGTMV-DENGDPR 402
F L ++ +K F+ T SKI + G K+Q+++L +ID +LP GG E G
Sbjct: 273 FRLLWNTVKSFLDPKTTSKIHVLGN---KYQSKLLEVIDASELPEFLGGACTCPEYGG-- 327
Query: 403 CSLIVKPGGKVPKCYYSKNTSEKQKNYNKVTIKTGEKHVL 522
C K K + E Q VT+ GE+ ++
Sbjct: 328 CLKAEKGPWKDQNILNIVLSGEAQCARQIVTVSNGEEKII 367
>08_02_0290 +
15383473-15383669,15385057-15385267,15386389-15386440,
15386545-15386863,15387022-15387121,15387391-15387657,
15387780-15387857,15387943-15388032,15388119-15388168,
15388267-15388366,15388777-15388875,15389023-15389136,
15389238-15389412,15389726-15390132,15390565-15390639,
15391412-15391438
Length = 786
Score = 37.1 bits (82), Expect = 0.013
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +1
Query: 226 FSLAFSVIKKFMHEYTISKIKIFGTDTKKWQAQVLNLIDKDQLPVHYGG 372
F L ++ +K F+ T SKI + GT K+ ++L +ID QLP GG
Sbjct: 418 FKLLWNTVKGFLDPKTASKIHVLGT---KFHGKLLEVIDASQLPEFLGG 463
>03_05_0960 +
29221087-29221091,29221370-29221468,29221773-29221815,
29222056-29222154,29222240-29222485,29222633-29222941
Length = 266
Score = 35.9 bits (79), Expect = 0.030
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Frame = +1
Query: 169 KNHYIQRK*PYGAVCAPKVFSLAFSVIKKFMHEYTISKIKIFGTDTKKWQAQVLNLIDKD 348
+NHY +R PKVF + V+K F+ +I K+ ++ + ID +
Sbjct: 140 QNHYPERLAIGILFNPPKVFEAFWKVVKHFLDPKSIQKVNFVYLKNEESMKILHKYIDPE 199
Query: 349 QLPVHYGG-TMVDENGDPRCSLIVKPGGKVPKCYYSKNTSEKQKNYNKV 492
LPV +GG V + + L+VK K+ +++ +T K + NKV
Sbjct: 200 VLPVEFGGKNNVVYSHEEYSKLMVKDDIKMAS-FWASDT--KTDHVNKV 245
>01_06_0403 -
29060712-29060732,29061260-29061334,29061596-29061762,
29061841-29061996,29062412-29062535,29062949-29063047,
29063155-29063254,29063331-29063380,29063461-29063562,
29063709-29063786,29063865-29064131,29064225-29064321,
29064446-29064746,29066714-29066805,29066890-29067005,
29067445-29067519,29067846-29067911,29068206-29068262,
29068381-29068430,29068518-29068688,29068969-29069060,
29069124-29069281
Length = 837
Score = 35.9 bits (79), Expect = 0.030
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +1
Query: 226 FSLAFSVIKKFMHEYTISKIKIFGTDTKKWQAQVLNLIDKDQLPVHYGG 372
F + + IK F+ T SKI + G+ K+Q ++L ID+ +LP GG
Sbjct: 554 FKMLWGTIKSFLDPQTASKIHVLGS---KYQNKLLETIDESELPDFLGG 599
>09_02_0102 -
4295329-4295366,4295622-4295702,4295946-4296252,
4296616-4296696,4296818-4296919,4297358-4297396,
4297453-4297548,4297624-4297683,4297942-4297995,
4298230-4298307,4298577-4298630,4298705-4298788,
4300457-4300485,4300666-4300720
Length = 385
Score = 31.9 bits (69), Expect = 0.48
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +1
Query: 175 HYIQRK*PYGAVCAPKVFSLAFSVIKKFMHEYTISKIKI-FGTDTKKWQAQVLNLIDKDQ 351
+Y ++ Y V AP VFS + V+K + E T KIK+ +G+ + ++L ++D +
Sbjct: 195 NYPEKTETYFIVNAPYVFSACWKVVKPLLQERTKRKIKVLYGSG----RDELLKVMDYEA 250
Query: 352 LP 357
LP
Sbjct: 251 LP 252
>09_03_0040 + 11816056-11819069,11819837-11820428
Length = 1201
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 283 IKIFGTDTKKWQAQVLNLIDKDQLPVHYGGTMVDENGD 396
++IF T K W + L+ I Y G ++ ENGD
Sbjct: 1023 LEIFKTGNKGWGVRSLSSISSGSFVCEYAGEVLQENGD 1060
>05_03_0218 -
10437377-10437622,10437896-10438141,10438528-10438611,
10438720-10438854
Length = 236
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +1
Query: 217 PKVFSLAFSVIKKFMHEYTISKIKIFGTDTKKWQAQVLNLIDKDQLPVHYGG 372
P++F + +IK F+ K+K T+ + V + D D L +GG
Sbjct: 147 PRIFESFWKIIKHFLEAKMSEKVKFLYTNNPESHKIVSEMFDMDLLETAFGG 198
>10_01_0115 -
1426573-1426590,1426838-1426912,1427106-1427464,
1427551-1427656,1428091-1428207,1428319-1428420,
1428520-1428613,1428697-1428746,1429029-1429106,
1429189-1429455,1429573-1429672,1429757-1430039,
1430312-1430357
Length = 564
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 310 KWQAQVLNLIDKDQLPVHYGGTMVDENG 393
K+Q+++L +ID +LP +GGT E G
Sbjct: 263 KYQSKLLEVIDASELPEFFGGTCQCEGG 290
>11_01_0464 + 3597568-3600244,3600345-3600742
Length = 1024
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 147 QNPQTLFEKPLHPKKVTVWCGLC-TQSLLSSILCDQKIYARIHHIEDQDIR 296
+NP + EK LH + + GLC T+ + Q++ A++H I+D +R
Sbjct: 972 ENPIAVEEKGLHCLRSMLNIGLCCTKPTPGERISMQEVAAKLHRIKDAYLR 1022
>10_08_0074 - 14668625-14669797
Length = 390
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 400 RCSLIVKPGGKVPKCYYSKNTSEKQKNYNKVTIKTGE--KHVLDLLCADNDSVLKWEIGV 573
RC ++V + + TS K K VT+ + +H+ DLLCA+ + + +E G
Sbjct: 170 RCDVVVTKRIRSEETPLVVRTSPKPKVARLVTVPPSDLHRHLQDLLCAEKGADVVFEAGG 229
Query: 574 E 576
E
Sbjct: 230 E 230
>06_03_0709 -
23759162-23759455,23759681-23759761,23759847-23759948,
23760068-23760163,23760256-23760315,23760496-23760549,
23760657-23760695,23761102-23761179,23761476-23761529,
23761797-23761880,23763447-23763475,23763602-23763659
Length = 342
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +1
Query: 175 HYIQRK*PYGAVCAPKVFSLAFSVIKKFMHEYTISKIKIFGTDTKKWQAQVLNLIDKDQL 354
+Y ++ Y V AP +FS + V+K + E T K+ + + ++L ++D L
Sbjct: 196 NYPEKAETYYIVNAPYIFSACWKVVKPLLQERTRKKVHVLHGCGRD---ELLKIMDHSSL 252
Query: 355 P 357
P
Sbjct: 253 P 253
>08_02_1047 -
23927822-23928112,23928736-23928981,23929119-23929395,
23929522-23929799,23931147-23931572
Length = 505
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +3
Query: 135 IRGSQNPQTLFEKPLHPKKVTVWCGLCTQSLLSSILCDQKIYARIHHIEDQDIRYGYKEM 314
+RG+ T P+H + CGL T+S IL + + + +H E + EM
Sbjct: 375 VRGAGQIVTWVTDPMHGNTMKAPCGLKTRS-FDRILAEVRAFFDVHEQEGSHPGGVHLEM 433
Query: 315 AGASI 329
G ++
Sbjct: 434 TGQNV 438
>08_02_0464 - 17463066-17465136,17470821-17471650
Length = 966
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +3
Query: 210 LCTQSLLSSILCDQKIYARIHHIEDQDIRYGYKEMAGASIEPDR*GPATGSL 365
LCT+ ++ + Q++ AR+ ++DQ RY ++AG+S P G+L
Sbjct: 109 LCTRHRIAKQI--QELKARVVEVKDQRERYKLDDVAGSSYTSLTIDPRMGAL 158
>01_01_1135 -
9003823-9004182,9004308-9004367,9004441-9004683,
9005207-9005305,9005807-9005986,9006090-9006164
Length = 338
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 244 VIKKFMHEYTISKIKIFGTDTKKWQAQVLNLIDKDQLPVHYGG 372
++K F+ T K+K + K+ Q + ++ D D+L +GG
Sbjct: 220 IVKPFLDHETYKKVKFVYSSDKESQKIMADVFDLDKLDSAFGG 262
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,557,240
Number of Sequences: 37544
Number of extensions: 400576
Number of successful extensions: 988
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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