Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0480
(682 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14943| Best HMM Match : CRAL_TRIO (HMM E-Value=8e-05) 51 1e-06
SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033) 50 2e-06
SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_40760| Best HMM Match : CRAL_TRIO (HMM E-Value=0.00016) 43 2e-04
SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2) 42 3e-04
SB_59387| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_52107| Best HMM Match : DUF833 (HMM E-Value=1.6e-09) 29 4.6
SB_40116| Best HMM Match : EGF (HMM E-Value=0) 29 4.6
SB_2246| Best HMM Match : G-patch (HMM E-Value=5.5e-11) 29 4.6
SB_29063| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 29 4.6
SB_42892| Best HMM Match : F5_F8_type_C (HMM E-Value=3.4e-06) 28 6.1
SB_26621| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_41282| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_14943| Best HMM Match : CRAL_TRIO (HMM E-Value=8e-05)
Length = 391
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/98 (23%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Frame = +1
Query: 313 WQAQVLNLIDKDQLPVHYGGTMVDENGDPRCSLIVKPGGKVPKCYYSKNTSEKQKNYNKV 492
W+ ++ +D+D LP YGG DE DP+C+ + GG +P+ ++ + KV
Sbjct: 148 WKKELQEYVDEDNLPEFYGGKCRDEKDDPKCATKICYGGDIPESFHVAQKPFGEAEGTKV 207
Query: 493 TIKTGEKHVLDLL--CADNDSVLKWEIGVEHHEIKFQI 600
T+ K +L++ + + ++W+ + +++ F +
Sbjct: 208 TVVERGK-ILEIRGDVTTSATTIRWDFRTKENDVGFGV 244
>SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033)
Length = 999
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +3
Query: 60 FFIKIMFSDEAHFQLGGYVNKQSCRIRGSQNPQTLFEKPLHPKKVTVW 203
F + FSDEAHF L G+VN ++ GS+ P+ + ++PLH K T W
Sbjct: 561 FLENVWFSDEAHFLLSGHVNTKNNIFWGSKVPEEVLQRPLHSVKCTAW 608
>SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 640
Score = 46.8 bits (106), Expect = 2e-05
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 7/140 (5%)
Frame = +1
Query: 208 VCAPKVFSLAFSVIKKFMHEYTISKIKIFGTDTKKWQAQVLNLIDKDQLPVHYGGTMVDE 387
V AP++F + ++++ F+ E T +K I+G + + V + ID + LP G
Sbjct: 26 VRAPRIFGVLWTLVSPFIDENTRNKFLIYGGNDYQGPGGVTDYIDAEYLPDFLG------ 79
Query: 388 NGDPRCSLIVKPGGKVPKCYY-------SKNTSEKQKNYNKVTIKTGEKHVLDLLCADND 546
G C +K G VPK Y S Y V + G H + + + ++
Sbjct: 80 -GPAECK--IKEGKLVPKSLYRSLDFEDGNEPSFASDIYQTVHVSKGSPHEVLVSMSQSE 136
Query: 547 SVLKWEIGVEHHEIKFQIKR 606
SV+ W+ V ++ F + R
Sbjct: 137 SVITWDFDVMKADVTFTVFR 156
>SB_40760| Best HMM Match : CRAL_TRIO (HMM E-Value=0.00016)
Length = 430
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +1
Query: 313 WQAQVLNLIDKDQLPVHYGGTMVDENGDPRCS 408
W+ + I D LPV+YGGT VD++GDP CS
Sbjct: 109 WKEVLWQHIPADHLPVYYGGTCVDDSGDPACS 140
Score = 35.9 bits (79), Expect = 0.030
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +1
Query: 424 GGKVPKCYYSKNTSEKQKNYNKVTIKTGEKHVLDLLCADNDSVLKWEIGVEHHEIKFQI 600
GG VP+ Y+S + + + Y ++ G L +SV+ WE E H+I F +
Sbjct: 182 GGDVPESYFSTSQTLETDAYQTGIVRRGSTFKLSYEIETPNSVISWEFKSEDHDIGFGV 240
>SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2)
Length = 615
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +3
Query: 60 FFIKIMFSDEAHFQLGGYVNKQSCRIRGSQNPQTLFEKPLHPKK 191
F + FSDEAHF L G+VN ++ GS+ P+ + ++PLH K
Sbjct: 194 FLENVWFSDEAHFLLFGHVNTKNNIFWGSKVPEEVLQRPLHSVK 237
>SB_59387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 806
Score = 30.7 bits (66), Expect = 1.1
Identities = 25/98 (25%), Positives = 45/98 (45%)
Frame = +1
Query: 250 KKFMHEYTISKIKIFGTDTKKWQAQVLNLIDKDQLPVHYGGTMVDENGDPRCSLIVKPGG 429
++F+H+ T+ K + D K+W +++ LP +Y G + D+NG+ S
Sbjct: 474 RRFVHQQTMEK-RGKAVDRKEWHMTPVDVNAYYSLPNNYIGRLFDKNGNLE-SWWKNQSV 531
Query: 430 KVPKCYYSKNTSEKQKNYNKVTIKTGEKHVLDLLCADN 543
+ + + S E+ N+ +K K LD ADN
Sbjct: 532 EAFEEHVSCMV-EQYSNFTVADVKVDGKQTLDENIADN 568
>SB_52107| Best HMM Match : DUF833 (HMM E-Value=1.6e-09)
Length = 624
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +1
Query: 448 YSKNTSEKQKNYNKVTIKTGEKHVLDLLCADNDSVLKWEIGVEHHEIK 591
Y +N + YN + GE LC+D++S ++W E +IK
Sbjct: 61 YLRNIQQNGSKYNGFNLLVGE------LCSDSESKIEWYCNCEDKQIK 102
>SB_40116| Best HMM Match : EGF (HMM E-Value=0)
Length = 340
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +1
Query: 355 PVHYGGTMVDENGDPRCSLIVKPGGKVPKCYYSKNTSEKQKNYNKVTIKTGEKHVLDLLC 534
P YGGT VD D C + GK+ C+ + N + + N T E+ +C
Sbjct: 9 PCQYGGTCVDGLDDFTCLCVPGTTGKI--CHINVNYCDSEPCMNNATC-VDEQDGFTCIC 65
Query: 535 A 537
A
Sbjct: 66 A 66
>SB_2246| Best HMM Match : G-patch (HMM E-Value=5.5e-11)
Length = 396
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +3
Query: 456 EYQ*KTEELQ*SHHKDRREARLRFAVCGQRQRFEMGNRSGTSRNKISNKTKGRGRQ 623
+Y+ E+++ +DRRE R R R+RFE R++ + + R R+
Sbjct: 114 DYEVVKEKIREKRERDRREERDRERDVRMRERFEREQEKDRERDRDKERPRERRRE 169
>SB_29063| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 561 GNRSGTSRNKISNKTKGRGRQRGSG 635
G R G+ R + + GRGR RGSG
Sbjct: 41 GGRGGSGRGRGRGRGSGRGRGRGSG 65
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 433 VPKCYYSKNTSEKQKNYNKVTIKTGEK 513
VPK Y++N + +K+YN T++ EK
Sbjct: 326 VPKSMYTENQEKHKKDYNSNTLQDDEK 352
>SB_42892| Best HMM Match : F5_F8_type_C (HMM E-Value=3.4e-06)
Length = 812
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 388 NGDPRCSLIVKPGGKVPKCYY 450
N P CSL P ++P+CYY
Sbjct: 784 NSVPSCSLTFGPSCRLPECYY 804
>SB_26621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 256 FMHEYTISKIKIFGTDTKKWQAQVLNLIDKDQLP 357
F+ ++ S K+ TK W+A+ L D+ Q+P
Sbjct: 311 FLEDFNSSAKKLLCCGTKSWKAEQETLTDQPQIP 344
>SB_41282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 410
Score = 27.9 bits (59), Expect = 8.0
Identities = 23/79 (29%), Positives = 37/79 (46%)
Frame = +1
Query: 394 DPRCSLIVKPGGKVPKCYYSKNTSEKQKNYNKVTIKTGEKHVLDLLCADNDSVLKWEIGV 573
D +C + P KV KCY+S+ +K+K+ N +T T E+ D+ S+ + I
Sbjct: 332 DNKCK-VFSPDFKV-KCYFSETGEKKEKSKNSLT--TEERRNRSRGSDDSTSLDRLSIDN 387
Query: 574 EHHEIKFQIKRRDEEGNEE 630
E F +E+ EE
Sbjct: 388 NVDEDDFSDTDDEEKWEEE 406
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,817,897
Number of Sequences: 59808
Number of extensions: 476594
Number of successful extensions: 1432
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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