Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0479
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36841| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_33698| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_9985| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.0  
SB_55243| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_47927| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34)                 29   4.7  
SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29)               29   4.7  
SB_34552| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)                        28   8.3  

>SB_36841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = -3

Query: 43 PRAESCSPGDPLV 5
          PR+ SCSPGDPLV
Sbjct: 2  PRSNSCSPGDPLV 14


>SB_33698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = -3

Query: 43 PRAESCSPGDPLV 5
          PR+ SCSPGDPLV
Sbjct: 21 PRSNSCSPGDPLV 33


>SB_9985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 193

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = -3

Query: 43  PRAESCSPGDPLV 5
           PR+ SCSPGDPLV
Sbjct: 68  PRSNSCSPGDPLV 80


>SB_55243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = -3

Query: 43 PRAESCSPGDPLV 5
          PR+ SCSPGDPLV
Sbjct: 16 PRSNSCSPGDPLV 28


>SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1256

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 427 FDRNRVWPKSHVVRGLDLTASACS 356
           F RNR WP S +V  LD  A+ CS
Sbjct: 204 FVRNRPWPNSTIVLELDEFATECS 227


>SB_47927| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34)
          Length = 512

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +2

Query: 65  QRKKKSVLIRILNGSWFELCEFSLARSVSQCVVKE 169
           + ++KS ++  L  + +++CEF LAR   +  VKE
Sbjct: 105 ESEEKSEILSNLGAAHYKICEFQLARKYYELHVKE 139


>SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29)
          Length = 1890

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 21/69 (30%), Positives = 30/69 (43%)
 Frame = -3

Query: 586 LLIKKEKKIRYDSFFLCSTNRSDVSGKHLTLNVNLSRKRKPAFYYKRGSGLSTFDRNRVW 407
           LLI   +K   DS    +T   + SGK          KR  A  +KRGS L T D +  +
Sbjct: 759 LLIDLIRKDSRDSGSRDTTLSPEESGKGFQSQAQCRCKRTGASTWKRGSRLHTVDTDITF 818

Query: 406 PKSHVVRGL 380
           P   ++  +
Sbjct: 819 PPMPIITAI 827


>SB_34552| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -3

Query: 43 PRAESCSPGDPLV 5
          P++ SCSPGDPLV
Sbjct: 30 PQSNSCSPGDPLV 42


>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 1026

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
 Frame = -3

Query: 529  NRSDVSGKHLTLNVNLSRKRKPAFYYKRGSGLSTFDRNRVWPKSHVVRGLDLTASACSI- 353
            ++ D+S K     +N+S+  K  F   R SG    D+ R WPK  V      +   C++ 
Sbjct: 752  SKKDLSKKSKP-QLNISKPLKKTFQSGR-SGKFNLDKPRQWPKDAVDITHPASKVTCAVG 809

Query: 352  ---*RGKPRQTCTTKKK*QRNKARLKLIIKNYFKRTD 251
                 GK RQ    K + Q+ +    L +     R D
Sbjct: 810  GGKATGKQRQGAKRKAREQKEETPPMLCVGGQHDRGD 846


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,114,225
Number of Sequences: 59808
Number of extensions: 393027
Number of successful extensions: 2399
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2399
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)