Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0479
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17980.1 68418.m02109 C2 domain-containing protein contains I...    29   2.9  
At3g43710.1 68416.m04665 kelch repeat-containing F-box family pr...    28   5.1  
At5g16640.1 68418.m01948 pentatricopeptide (PPR) repeat-containi...    28   6.8  
At5g65470.1 68418.m08233 expressed protein contains Pfam PF03138...    27   8.9  

>At5g17980.1 68418.m02109 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1049

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 65  QRKKKSVLIRILNGSWFELCEFSLARSVS 151
           QR++   ++R LN  W E  EFSLA+  S
Sbjct: 37  QRRRTRTIVRDLNPVWNETLEFSLAKRPS 65


>At3g43710.1 68416.m04665 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 378

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +1

Query: 523 SDLYYTKKTNRNVSSFLFLLIKLSNKTTSWMLGSLLKVINK*NK*IVPMI 672
           ++LY T+    +  SFLF+ +++ N +    L +L +  N   K +VP++
Sbjct: 63  TELYQTRNLLGSTESFLFVCLRIVNDSNPLRLFTLCRRPNSLTKVMVPIL 112


>At5g16640.1 68418.m01948 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 504

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 653 LFYLFITLRSDPSIQDVVLLLSFINKKRKEDTLRFVF 543
           LF+  +  R  PSI D   LLS I+K +K D + +++
Sbjct: 68  LFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLW 104


>At5g65470.1 68418.m08233 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown;
          Length = 504

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +3

Query: 312 FFFVVQVCLGLPLYMEHAEAVRSRPRTTWLLGQTLLRSKVESPE 443
           FFFVV  C  +      +E +  +PR   LL   L RS  E  +
Sbjct: 16  FFFVVLFCNNVSTSSSSSEVITIKPRHLSLLKSALQRSSGEQSD 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,982,138
Number of Sequences: 28952
Number of extensions: 267236
Number of successful extensions: 637
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)