Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0478
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    32   0.068
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    28   1.5  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.5  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   4.4  
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c...    26   5.9  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    26   5.9  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 32.3 bits (70), Expect = 0.068
 Identities = 38/146 (26%), Positives = 69/146 (47%)
 Frame = -3

Query: 622 VLSLLT*KSRSLVSRSSNLELHAPLK*MALTRTAAVAELSESGLTKSLMRLLVFSSTQSL 443
           V S+L+  + S  S S ++   +     +   T++ + +S S  + S +      ST SL
Sbjct: 576 VSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSL 635

Query: 442 IDLAATVFFEKSMFWTSELKTSXETTAKXXXXXXXX*TYTLFAILSSTPLIDRRSRLLLA 263
           +  ++++    S   +S + T   +++          TY+   I SS+ L+   S L+++
Sbjct: 636 MISSSSIISGSSSILSSSISTIPISSS--------LSTYSSSVIPSSSTLVSSSSSLIVS 687

Query: 262 NSVRIASSSGKPIAFKSSSWVSPSEA 185
           +S  +ASSS  PI   SSS VS   A
Sbjct: 688 SS-PVASSSSSPIP-SSSSLVSTYSA 711


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 261 FASKSRDLRSIKGVELKMANKVYVHDGGKLDE 356
           FA + ++L   KGV+L M +   +HDG  L +
Sbjct: 79  FALRMKELADFKGVDLLMVDTGDLHDGNGLSD 110


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 18/71 (25%), Positives = 31/71 (43%)
 Frame = -3

Query: 397 TSELKTSXETTAKXXXXXXXX*TYTLFAILSSTPLIDRRSRLLLANSVRIASSSGKPIAF 218
           TS + TS  ++A               ++ SS+ +    S +L ++S    SSS      
Sbjct: 7   TSSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPL 66

Query: 217 KSSSWVSPSEA 185
            SSS+ SP+ +
Sbjct: 67  SSSSFTSPASS 77


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 531 VNAIYFKGAWSSKFDERLTSDRDFYVSKDKTI 626
           V+A+ F+  W +    R T D DF   K KTI
Sbjct: 68  VSALKFEWNWQNLGISRYTKDCDFRSKKQKTI 99


>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 673 LSPYL*SPRLYIMGTLIVLSLLT*KSRSLVSRSS 572
           L   L SP LY+   ++   L T  SRSLV+RS+
Sbjct: 73  LDGLLYSPVLYLFSYILPSKLFTIFSRSLVNRSA 106


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 420 NTVAAKSINDWVEENTNNRIKDLVNPDSLS 509
           +T +A SIN W+ +NT   I+ + N  SLS
Sbjct: 9   STSSASSIN-WIPKNTKTSIESVSNTISLS 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,649,191
Number of Sequences: 5004
Number of extensions: 52170
Number of successful extensions: 184
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)