Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0478
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0824 - 32243495-32244319,32244449-32244859 92 3e-19
11_02_0011 - 7337618-7338496,7338596-7338991 74 9e-14
01_01_1152 + 9170628-9171899 74 1e-13
04_04_0619 + 26652923-26653267,26653440-26654273 73 2e-13
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 72 4e-13
11_02_0012 - 7346282-7347136,7347234-7347593 70 2e-12
11_01_0767 + 6438648-6438809,6439146-6440000 69 5e-12
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 67 1e-11
11_01_0750 - 6315126-6315896,6316371-6316784 67 1e-11
11_02_0014 - 7352619-7352918,7353173-7353418 60 2e-09
11_01_0771 + 6453130-6454488 57 1e-08
05_06_0044 - 25150322-25151260 52 6e-07
08_01_0224 + 1789447-1789633,1789959-1790261,1793380-1793542,179... 30 2.0
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 29 2.6
05_05_0373 - 24478361-24479383 29 3.5
02_01_0384 - 2781362-2782299,2782320-2782428 29 3.5
12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43... 29 4.6
12_01_0121 - 920988-921296,921556-921620,921874-921923,922009-92... 28 6.0
09_04_0752 + 19933604-19934278,19934679-19935387,19936118-199361... 28 6.0
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 28 6.0
01_06_0373 - 28841462-28842850 28 8.0
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 92.3 bits (219), Expect = 3e-19
Identities = 62/188 (32%), Positives = 95/188 (50%), Gaps = 9/188 (4%)
Frame = +3
Query: 129 KSVVLSAFSVLPPLAQLALASDGETHEELLKAIG---FPDDDAIRTE-----FASKSRDL 284
K++ +S S+ LA L + GET ++++ +G P A+ + A S
Sbjct: 32 KNLAVSPLSLHAALALLGAGARGETLDQIIAFLGPAGGPAHAALASHVALCSLADDSGPG 91
Query: 285 RSIKGVELKMANKVYVHDGGKLDENFAVVSXDVFNSDVQNIDF-SKNTVAAKSINDWVEE 461
G +++ AN V+V +L +A V D + ++ + + F K A + IN+W E
Sbjct: 92 DDRGGPKVRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFES 151
Query: 462 NTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMM 641
T RIKD + D++ AT AVL NA+YFKG W SKFD R TSD FY+ + P M
Sbjct: 152 ATAGRIKDFLPKDAVDRATPAVLGNALYFKGDWESKFDARSTSDDVFYLPDGGHVSAPFM 211
Query: 642 YKRGDYKY 665
G ++Y
Sbjct: 212 -SSGKWQY 218
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 74.1 bits (174), Expect = 9e-14
Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 5/185 (2%)
Frame = +3
Query: 129 KSVVLSAFSVLPPLAQLALASDGETHEELLKAIGFP--DD--DAIRTEFASKSRDLRSIK 296
K++V S S+ LA +A + G T +ELL +G DD +++R D +
Sbjct: 31 KNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLDDLEESVRRAVEVGLADESASG 90
Query: 297 GVELKMANKVYVHDGGKLDENFAVVSXDVFNSDVQNIDFSKNTVAA-KSINDWVEENTNN 473
G + A V+ + +L + + + + + +F + + K IN WV + TN
Sbjct: 91 GPRVSDACGVWHDETLELKPAYRAAAAGTYKAVTRAANFQRQPKRSRKKINKWVSKATNK 150
Query: 474 RIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKRG 653
I +++ S+ TA VLVNAIYFKG WS+ F T+ F+ ++ VP M R
Sbjct: 151 LIPEILPDGSVHVDTALVLVNAIYFKGKWSNPFPRSSTTTGKFHRLDGSSVDVPFMSSRE 210
Query: 654 DYKYG 668
D G
Sbjct: 211 DQYIG 215
>01_01_1152 + 9170628-9171899
Length = 423
Score = 73.7 bits (173), Expect = 1e-13
Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 2/174 (1%)
Frame = +3
Query: 126 GKSVVLSAFSVLPPLAQLALASDGETHEELLKAIGFPD-DDAIRTEFASKSRDLRSIKGV 302
G++ ++S S LA +A + GET ELL +G P + R+ LR +
Sbjct: 58 GRNFIVSPLSFHAALALVADGARGETQRELLGFLGSPSLAELHRSPTTRLVARLRHLPNT 117
Query: 303 ELKMANKVYVHDGGKLDENFAVVSXDVFNSDVQNIDFSKNTVAAKS-INDWVEENTNNRI 479
A V+V G L FA + + + + DF+ A+ +N +V + T I
Sbjct: 118 SF--ACGVWVDRGRALTPEFADAAASRYAAVAEPADFATQPEQARERVNAFVSDATEGLI 175
Query: 480 KDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMM 641
+D++ P+S+ S+T VL NA++FKG WS F T F++ ++ P M
Sbjct: 176 RDVLPPNSVDSSTVVVLANAVHFKGTWSLPFHPSATFHAPFHLLDGGAVRAPFM 229
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 72.9 bits (171), Expect = 2e-13
Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 1/159 (0%)
Frame = +3
Query: 168 LAQLALASDGETHEELLKAIGFPDDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGK 347
LA LA +DGET +LL +G + A ++R+ +L A ++V +
Sbjct: 33 LALLATGTDGETLRQLLAFLGSQHIHQLNAASAGLLAEMRAWP--QLSFAAGIFVDRSLR 90
Query: 348 LDENFAVVSXDVFNSDVQNIDFSKNT-VAAKSINDWVEENTNNRIKDLVNPDSLSSATAA 524
L F + + +++DF AA +N ++ + TN R+ + ++P + S+T
Sbjct: 91 LRPEFQSTAAAAHGAFPRSVDFQNQANAAAAEVNRFISQATNGRLNNTISPGTFGSSTKC 150
Query: 525 VLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMM 641
VL NA++FK W KF+ T R F+ + VP +
Sbjct: 151 VLANAMHFKATWGRKFESYDTQRRRFHRQDGTRVTVPFL 189
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 72.1 bits (169), Expect = 4e-13
Identities = 31/75 (41%), Positives = 46/75 (61%)
Frame = +3
Query: 417 KNTVAAKSINDWVEENTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDR 596
K A +N WVE+ T+ IK+++ P S+ T VL NA+YFKGAW+ KFD T D
Sbjct: 209 KAAEVASQVNSWVEKVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKDG 268
Query: 597 DFYVSKDKTIKVPMM 641
+F++ K+++ P M
Sbjct: 269 EFHLLDGKSVQAPFM 283
Score = 68.1 bits (159), Expect = 6e-12
Identities = 28/70 (40%), Positives = 44/70 (62%)
Frame = +3
Query: 441 INDWVEENTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDK 620
+N WV+ T+ IK++ P S++ T VL NA+YFKGAW+ KFD T D +F++ +
Sbjct: 469 VNSWVDRVTSGLIKNIATPRSINHNTKLVLANALYFKGAWAEKFDVSKTEDGEFHLLDGE 528
Query: 621 TIKVPMMYKR 650
+++ P M R
Sbjct: 529 SVQAPFMSTR 538
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 69.7 bits (163), Expect = 2e-12
Identities = 57/189 (30%), Positives = 87/189 (46%), Gaps = 5/189 (2%)
Frame = +3
Query: 117 NNPGKSVVLSAFSVLPPLAQLALASDGETHEELLKAIGFP--DD--DAIRTEFASKSRDL 284
+N ++VV S S+ LA +A + G T +EL+ +G DD +++R D
Sbjct: 27 DNSNRNVVFSPVSLYAALALVASGARGTTLDELVALLGAASLDDLEESVRRAVEVGLADE 86
Query: 285 RSIKGVELKMANKVYVHDGGKLDENFAVVSXDVFNSDVQNIDFSKNTVAA-KSINDWVEE 461
G + A V+ HD E A+ + DF + ++ K IN WV +
Sbjct: 87 SESGGPRVSYACGVW-HD-----ERLAL------KPAYRAADFQRQPKSSRKKINKWVSK 134
Query: 462 NTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMM 641
TN I++++ S+ TA VLVNAIYFKG WS+ F T+ F+ ++ P M
Sbjct: 135 ATNKLIREILPDGSVHGGTALVLVNAIYFKGKWSNPFPRERTTTGKFHRLDGSSVDAPFM 194
Query: 642 YKRGDYKYG 668
R D G
Sbjct: 195 SSREDQYIG 203
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 68.5 bits (160), Expect = 5e-12
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Frame = +3
Query: 384 FNSDVQNIDFSKNTVAA-KSINDWVEENTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAW 560
+ +DF + V A K IN WV T N I +++ P+S S T V+ NAIYFKG W
Sbjct: 42 YKGAASTVDFKNHPVEARKEINAWVARATKNLITEVIKPESQSVDTRHVVGNAIYFKGEW 101
Query: 561 SSKFDERLTSDRDFYVSKDKTIKVPMMYK-RGDYKY 665
+ FD+ T++R+F +++VP M + G Y +
Sbjct: 102 LAPFDKSDTAEREFRRLDGSSVEVPFMQRPSGSYHH 137
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 67.3 bits (157), Expect = 1e-11
Identities = 29/70 (41%), Positives = 42/70 (60%)
Frame = +3
Query: 432 AKSINDWVEENTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVS 611
A +N WV+ T+ IK+++ P S+ T VL NA+YFKGAW+ KFD T D +F +
Sbjct: 6 ASQVNSWVDRVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKDGEFRLL 65
Query: 612 KDKTIKVPMM 641
K++ P M
Sbjct: 66 DGKSVLAPFM 75
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 66.9 bits (156), Expect = 1e-11
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 10/180 (5%)
Frame = +3
Query: 132 SVVLSAFSVLPPLAQLALASDGETHEELLKAIGFPDDD----AIRTEFASKS-----RDL 284
+ +SA +V LA A + G T ++L+A+G A AS+ RD
Sbjct: 33 NAAVSAPAVHVSLALAAGGARGATRRQVLQALGCGGGGRGGAADAANVASRVVKRVLRDR 92
Query: 285 RSIKGVELKMANKVYVHDGGKLDENFAVVSXDVFNSDVQNIDF-SKNTVAAKSINDWVEE 461
+ G L A V+ L F ++ +V+ S + DF +K A IN WV++
Sbjct: 93 STSGGPRLAFAGGVWADASRSLSPEFVGLAGNVYGSAAKKADFKNKPEDAPDQINSWVKD 152
Query: 462 NTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMM 641
+T + L+ ++ T VL +A+YF+G W + D R T+++ FY +++VP +
Sbjct: 153 STKGTVTTLLPAGTIDQNTGLVLGSALYFRGRWLDRDDLRRTTEQKFYCLDGTSVEVPFV 212
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 60.1 bits (139), Expect = 2e-09
Identities = 30/78 (38%), Positives = 40/78 (51%)
Frame = +3
Query: 435 KSINDWVEENTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSK 614
K IN+WV + TN I +++ S+ T VLVNAIYFKG WS F T+ F+
Sbjct: 88 KKINEWVSKATNKLIPEILPDGSVHRLTTLVLVNAIYFKGKWSDPFPRESTTTGKFHRLD 147
Query: 615 DKTIKVPMMYKRGDYKYG 668
++ V M R D G
Sbjct: 148 GSSVNVRFMRSREDQYIG 165
>11_01_0771 + 6453130-6454488
Length = 452
Score = 57.2 bits (132), Expect = 1e-08
Identities = 30/86 (34%), Positives = 42/86 (48%)
Frame = +3
Query: 348 LDENFAVVSXDVFNSDVQNIDFSKNTVAAKSINDWVEENTNNRIKDLVNPDSLSSATAAV 527
+D ++ + + V ++ K A K IN W T I D++ P S+ TA V
Sbjct: 146 IDAFILLLDPSMIDQCVLDLVSEKAEEARKQINAWARRATGKLITDVLPPRSVGPETAVV 205
Query: 528 LVNAIYFKGAWSSKFDERLTSDRDFY 605
L NAIYFKG W F+E T + FY
Sbjct: 206 LGNAIYFKGKWDRPFNESDTERKPFY 231
>05_06_0044 - 25150322-25151260
Length = 312
Score = 51.6 bits (118), Expect = 6e-07
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Frame = +3
Query: 324 VYVHDGGKLDENFAVVSXDVFNSDVQNIDFSKNTVAAKS-INDWVEENTNNRIKDLVN-- 494
V+V +L+ FA + VF + V++ + N AA++ IN+W T +KD+++
Sbjct: 3 VWVDASLRLNPAFADTAASVFKAAVRS---AGNPAAARAEINEWFSSQTGGFVKDILSNS 59
Query: 495 ----PDSLSSATAAV-----LVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMM 641
D A+ L N++YF W F LT + DF+VS D ++VP M
Sbjct: 60 IDDDDDGSGGGGGAISASVFLANSLYFNAYWDHPFFPHLTEEGDFHVSPDHDVRVPFM 117
>08_01_0224 +
1789447-1789633,1789959-1790261,1793380-1793542,
1793561-1793597,1794305-1794925
Length = 436
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 320 IRHFKLNAFN*SKITAFTREFCSYSIVVREADSFQKLFMGFTIRS 186
+RH ++ +N + + FC+Y+I + D KL G I+S
Sbjct: 130 VRHREITEYNPKQFCSIPTRFCAYNIAFFDLDKESKLARGPPIKS 174
>08_01_0906 +
8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/42 (28%), Positives = 28/42 (66%)
Frame = +3
Query: 237 DDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENF 362
+++++ A+K+ ++ ++KG+E+ A K++ G LDE+F
Sbjct: 594 NEESVANYCATKNNNVWNVKGLEVTGAIKLFDQRWGNLDEDF 635
>05_05_0373 - 24478361-24479383
Length = 340
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 426 VAAKSINDWVEENTNNRIKDLVNPDSLSSATAAVLV 533
VA + +DW E + ++ D V PD+LSS AAV +
Sbjct: 153 VALREPHDWGESTAHAQL-DAVAPDALSSCDAAVFL 187
>02_01_0384 - 2781362-2782299,2782320-2782428
Length = 348
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = -3
Query: 307 SSTPLIDRRSRLLLANSVRIASSSGKPIAFKSSSWVSPSEAKAN*ARGGSTENAER 140
S++P R+RL S +SG P +SSS SPS A RGG ++ R
Sbjct: 211 SASPASPSRTRLAPPRSPPAGGASGAPR--RSSSAASPSCAGVEGPRGGEVDDGRR 264
>12_01_0053 -
438527-438670,439038-439247,439401-439530,439672-439842,
440233-440355,440439-440543,440656-441332,441498-441604,
441970-442177,442178-442245,444209-444411,444580-444663,
444780-445109,445238-445438,445667-445744,446236-446306
Length = 969
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 255 TEFASKSRDLRSIKGVELKMANKVYVHDG 341
T+ S S+D++ ++ VE + N VHDG
Sbjct: 520 TQIPSASKDIKEVRAVEEFLPNDFVVHDG 548
>12_01_0121 -
920988-921296,921556-921620,921874-921923,922009-922106,
923832-923867,925351-925731,925839-926324,926471-926647
Length = 533
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +3
Query: 342 GKLDENFAVVSXDVFNSDVQNIDFSKNTVAAKSINDWVEENTNNRIKDLVNPDSLSSATA 521
G+L+ + S + F+ +ID + NT+ + +N V+E N R + + TA
Sbjct: 267 GRLNNSSGKASLNGFDIVKSHIDDALNTIHLEGLN-MVKEGKNGRALKRLKDKKEALLTA 325
Query: 522 AVLVNAIYFKG 554
VLV ++ G
Sbjct: 326 LVLVGIVHKAG 336
>09_04_0752 +
19933604-19934278,19934679-19935387,19936118-19936161,
19936607-19936704,19937056-19937160,19937694-19937757,
19938316-19938885
Length = 754
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3
Query: 295 LIDRRSRLLLANSVRIASSSGK 230
LIDRR RLL NS A++SGK
Sbjct: 643 LIDRRRRLLEVNSAVAAAASGK 664
>01_06_0823 +
32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 256 QNSRVKAVIFDQLKALSLKWRIKYTFMMVEN*TRILQSFPXTSSIRTSKTLISRRI 423
+N + K +FD+LKA LK +T + EN +L F + +K I R++
Sbjct: 679 KNKKDKDEVFDELKAAGLKRPCSFTDISSEN--ALLLEFETATDAAAAKAHIRRQL 732
>01_06_0373 - 28841462-28842850
Length = 462
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +3
Query: 138 VLSAFSVLPPLAQLALASDGETHEELLKAIGFPDDDAIRTEFASKSRD 281
+L+ F LP L A+ GE EEL+ A G P A + RD
Sbjct: 125 ILAFFLYLPVLHAQTTANFGEMGEELVHAPGIPSFPATHSVLPLMERD 172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,823,315
Number of Sequences: 37544
Number of extensions: 326745
Number of successful extensions: 964
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -