Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0477
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    28   1.4  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    27   1.9  
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   4.3  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    26   5.7  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    25   7.6  
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    25   7.6  
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    25   7.6  
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    25   7.6  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   10.0 

>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 118 NLGLRAYITVVESLYGSAIICKPSFSEKM*SKSP 17
           N+G+ AY+  + S++G  + C  S+S+K  +  P
Sbjct: 419 NMGMLAYMIRMVSIWGRVVRCLKSYSQKQSNPYP 452


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 22/100 (22%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
 Frame = +3

Query: 186 NKMNERKAVVRFPKMDLESNVNLDK-ALKAVGIKSMFSPDEANFALMIDSSDDKKENEVV 362
           N+ N+ K      +   E++  L K +L    I+  F P EAN A  +D+  +  + E V
Sbjct: 70  NEENKTKLAALLNRFHEETDNFLSKLSLCQQEIQDTFKPVEANLAYDVDTDSEDLDEESV 129

Query: 363 IRSRFGHEQSRMLKDALNSLPNPGVYVDSVLHNVKITVNE 482
           ++      +      +L +L   G+  ++++ + +  +NE
Sbjct: 130 VKDTEEIIEQAQHDVSLRNL--SGIEDENIIDDGETAINE 167


>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 203

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = +3

Query: 165 NKIDELINKMNERKAVVRFPKMDLESNVNLDKALKAVGIKSMFSPDEAN 311
           +KI +L  ++N+ K  ++  +M L     +DKA+    ++++FS DE N
Sbjct: 151 SKILKLEEELNDLKHSMK--EMQLYMTKIIDKAMNNASLENLFSLDENN 197


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 42  EKDGLHMIALPYNDSTTVMYALKPRLPM 125
           EK+ L  + +  +DST+++    PRLP+
Sbjct: 293 EKEKLSKVTVTPDDSTSIIRGFDPRLPV 320


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +3

Query: 342 KKENEVVIRSRFGHEQSRMLKDALNSLPNPGVYVDSVLHNVKITVNEFGTEAVAA 506
           +  N+  I +     Q+R  K  + SL   GVY+ + L  ++    E+G EA  +
Sbjct: 248 RNRNQATITNSNSKPQTRRSKIFVISLLGYGVYLLAFLDLIEYVSKEYGFEATVS 302


>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +3

Query: 384 EQSRMLKDALNSLPNPGVYVDSV-LHNVKITVNE--FGTEAVAATAGILARSAEQFYADS 554
           E++   KD  N +     +   V   NV +T ++  F TEA+ + A    +SA  FY +S
Sbjct: 264 ERNLFYKDLSNEVIKDSTFQRLVNFPNVLVTSHQAFFTTEALCSIAHTTLKSASDFYTNS 323


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 228 MDLESNVNLDKALKAVGIKSMFSPDEANFALMIDSSDDKKENEV 359
           MD E N N  +ALK   ++ +  PDE N  L   +    ++N V
Sbjct: 271 MDSEHNENEPRALKRRKVQKLLEPDE-NIELSTRTLSQWRKNYV 313


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 144 LMKKLDYNKIDELINKMNERKAVV 215
           L+K+LD   IDELI   NE+ A V
Sbjct: 42  LIKELDGKDIDELIAAGNEKLATV 65


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -2

Query: 379 PNLDLITTSFSFLSSDESIIKAKLA--SSGLNIDLIPTAFSALSRLTLLSKS 230
           P   ++++S S  +S  S   + +   SSG++   IP+ FS++S +   S S
Sbjct: 534 PMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTS 585


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,516,420
Number of Sequences: 5004
Number of extensions: 48752
Number of successful extensions: 170
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)