Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0477
(674 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0011 - 7337618-7338496,7338596-7338991 51 7e-07
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 51 7e-07
11_02_0012 - 7346282-7347136,7347234-7347593 51 1e-06
05_06_0044 - 25150322-25151260 46 3e-05
11_01_0771 + 6453130-6454488 39 6e-05
11_01_0750 - 6315126-6315896,6316371-6316784 44 1e-04
01_06_0824 - 32243495-32244319,32244449-32244859 44 1e-04
11_01_0767 + 6438648-6438809,6439146-6440000 37 0.013
11_06_0611 + 25461469-25461655,25461670-25462238 29 3.4
05_03_0509 + 14858250-14858545,14859139-14859243,14859345-14859912 29 3.4
01_01_0951 - 7463741-7463971,7464111-7464185 29 3.4
01_05_0489 + 22652479-22653718,22653882-22654063,22654172-226542... 29 4.5
11_01_0245 + 1884361-1884400,1884549-1885282 28 5.9
04_04_0345 - 24542869-24543540,24543725-24543805,24543845-245439... 28 5.9
03_05_0284 - 22712390-22712899,22712978-22713304,22713742-227140... 28 5.9
12_01_0242 + 1812891-1812897,1814073-1814830 28 7.8
09_01_0028 + 486800-486890,486928-488009,488825-489190,489342-48... 28 7.8
01_01_0790 + 6135910-6136045,6136316-6136497,6136604-6136749,613... 28 7.8
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 51.2 bits (117), Expect = 7e-07
Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Frame = +3
Query: 432 GVYVDSVLHNVKITVNEFGTEAVAATA---GILARS-AEQFYADSPFYIFIRNEKTKLVT 599
G+ V+ V H + VNE GTEA A+TA +L+ S E F AD PF F+ E + V
Sbjct: 352 GLVVEEVFHRAVVEVNEEGTEAAASTACTIRLLSMSYPEDFVADHPFAFFVVEETSGAVL 411
Query: 600 FSAVVYDPT 626
F+ V DPT
Sbjct: 412 FAGHVLDPT 420
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 51.2 bits (117), Expect = 7e-07
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Frame = +3
Query: 399 LKDALNSLPNPGVYVDSVLHNVKITVNEFGTEAVAATAGIL----ARSAEQFYADSPFYI 566
L + ++S ++V SV H + VNE GTEA AATA ++ A AE F AD PF
Sbjct: 386 LTEMVDSPEGKNLFVSSVFHKSFVEVNEEGTEAAAATAAVITLRSAPIAEDFVADHPFLF 445
Query: 567 FIRNEKTKLVTF 602
I+ + T +V F
Sbjct: 446 LIQEDMTGVVLF 457
Score = 46.0 bits (104), Expect = 3e-05
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Frame = +3
Query: 405 DALNSLPNPG---VYVDSVLHNVKITVNEFGTEAVAATAGILARSAEQ---FYADSPFYI 566
D + + +PG ++V SV H I VNE GTEA AA + S + F AD PF
Sbjct: 637 DLIEMVDSPGAQNLFVSSVFHKSFIEVNEEGTEATAAVMVSMEHSRPRRLNFVADHPFMF 696
Query: 567 FIRNEKTKLVTFSAVVYDPTI 629
IR + T ++ F V +P +
Sbjct: 697 LIREDVTGVILFIGHVVNPLL 717
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 50.8 bits (116), Expect = 1e-06
Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Frame = +3
Query: 435 VYVDSVLHNVKITVNEFGTEAVAATA------GILARSAEQFYADSPFYIFIRNEKTKLV 596
V V+ V+H + VNE GTEA AATA + S F AD PF F+ EK+ V
Sbjct: 332 VVVEKVMHRAVVEVNEEGTEAAAATACTMKFLCLTLTSPVDFVADHPFAFFVVEEKSDAV 391
Query: 597 TFSAVVYDPT 626
F+ V DPT
Sbjct: 392 LFAGHVLDPT 401
>05_06_0044 - 25150322-25151260
Length = 312
Score = 46.0 bits (104), Expect = 3e-05
Identities = 30/75 (40%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Frame = +3
Query: 423 PNPGVYVDSVLHNVKITVNEFGTEAVAATAGIL---ARSAEQ---FYADSPFYIFIRNEK 584
P G V S+LH + VNE GT A A T G + A +Q F AD PF FI E
Sbjct: 237 PPQGTAVSSLLHQCFVNVNEEGTVAAAGTVGEIMGFAMPDDQIVDFVADHPFLFFIVEEV 296
Query: 585 TKLVTFSAVVYDPTI 629
+ LV F+ V +P +
Sbjct: 297 SGLVVFAGQVVNPLL 311
>11_01_0771 + 6453130-6454488
Length = 452
Score = 39.1 bits (87), Expect(2) = 6e-05
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Frame = +3
Query: 435 VYVDSVLHNVKITVNEFGTEAVAATAGILARSAE-----QFYADSPFYIFIRNEKTKLVT 599
++V + H I VNE GT A AAT + S F A+ PF FI E + V
Sbjct: 382 LFVGDIQHKAVIEVNEEGTVAAAATMTRMLPSGVPPPPVDFVAEHPFAYFIVEEMSSAVV 441
Query: 600 FSAVVYDPTI 629
F+ + DP++
Sbjct: 442 FAGHIVDPSM 451
Score = 25.0 bits (52), Expect(2) = 6e-05
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +3
Query: 216 RFPKMDLESNVNLDKALKAVGIKSMFSPDEANFALMID 329
R PK + ++ AL+ +G++ FSP+ A+ + M++
Sbjct: 337 RVPKFKVSCGGSVVGALEQLGLRLPFSPELADLSDMVE 374
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 43.6 bits (98), Expect = 1e-04
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Frame = +3
Query: 315 ALMIDSSDDKKENEVVIRSRFGHEQSRMLKDALNSLPNPGVYVDSVLHNVKITVNEFGTE 494
+ ID D K+ + + E S M+K+ +S P +++ VLH + V++ G E
Sbjct: 290 SFQIDVKDFLKDMGLELPFLREAEFSDMIKEDDSSGP---LFLSDVLHKAVLEVDQKGIE 346
Query: 495 AVAATAGI-LARSAEQFYADSPFYIFIRNEKTKLVTFSAVVYDPT 626
+ + G+ A+ F AD PF+ IR E + V F V DP+
Sbjct: 347 ETSVSMGLGKPLPAQHFKADHPFFFMIREEVSGTVIFMGHVLDPS 391
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 43.6 bits (98), Expect = 1e-04
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Frame = +3
Query: 399 LKDALNSLPNPG-VYVDSVLHNVKITVNEFGTEAVAATA-----GILARSAE----QFYA 548
L + + S P + V +V H + VNE GTEA AATA G A SA F A
Sbjct: 323 LSEMVESSPEAEKIVVSAVYHESFVEVNEEGTEAAAATAVVMTLGCAAPSAPVHVVDFVA 382
Query: 549 DSPFYIFIRNEKTKLVTFSAVVYDPT 626
D PF I+ + T +V F+ V +P+
Sbjct: 383 DHPFMFLIKEDLTGVVVFAGQVTNPS 408
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 37.1 bits (82), Expect = 0.013
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 14/78 (17%)
Frame = +3
Query: 435 VYVDSVLHNVKITVNEFGTEAVAAT------AGILARSAE--------QFYADSPFYIFI 572
++V SV+H V + VNE G+EA A T G + F AD PF FI
Sbjct: 258 MFVSSVIHKVVVEVNEEGSEAAAYTEESDDDLGCSLYDDDYTPPPKLVDFVADHPFAFFI 317
Query: 573 RNEKTKLVTFSAVVYDPT 626
E+++ + F+ V DP+
Sbjct: 318 VEERSQAIVFAGHVLDPS 335
>11_06_0611 + 25461469-25461655,25461670-25462238
Length = 251
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -3
Query: 561 RTGSPRRTVQLIAPISRPSPPQLPFR 484
R G+P T+ +AP RP PP+LP R
Sbjct: 158 REGAP--TIHAVAPPRRPPPPRLPSR 181
>05_03_0509 + 14858250-14858545,14859139-14859243,14859345-14859912
Length = 322
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +3
Query: 378 GHEQSRMLKDALNSLPNPGVYVDSVLHNVKITVNEFGTEAVAATAG 515
G E + L+ L P G +VD +LH + AV+A G
Sbjct: 19 GKELAAQLQGLLRDSPEAGRFVDQILHTFSRAMRALDKAAVSAAGG 64
>01_01_0951 - 7463741-7463971,7464111-7464185
Length = 101
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +3
Query: 120 PMKLSLFDLMKKLDYNKIDELINKMNERKAVVRFPKMDLES 242
P+ LS+F+ K+ +++ +L K+N + +RF K +L +
Sbjct: 14 PLTLSIFEFNSKVMQDELQKLALKVNHHEENIRFLKSELNA 54
>01_05_0489 +
22652479-22653718,22653882-22654063,22654172-22654279,
22654364-22654467,22654570-22654657,22654760-22654870,
22654955-22655020,22656740-22656799,22656869-22657411,
22657646-22657765,22657845-22657964,22659083-22659136,
22659236-22659331,22660580-22660681
Length = 997
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +3
Query: 438 YVDSVLHNVKITVNEFGTEAVAATAGILARSAEQFYADSPFYIFIRNEKTKLVTFSAVV 614
Y + NVK++ + + ILA + + YIF RNEKT+ V F V+
Sbjct: 750 YATILAFNVKVSPDAQKLASQDGVKIILADVIDHLFEQFRKYIFPRNEKTEEVVFPCVL 808
>11_01_0245 + 1884361-1884400,1884549-1885282
Length = 257
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 417 SLPNPGVYVDSVLHNVKI 470
SLP+P +Y+D V HN KI
Sbjct: 83 SLPDPDMYIDKVDHNSKI 100
>04_04_0345 -
24542869-24543540,24543725-24543805,24543845-24543910,
24543991-24544098,24545101-24545436,24545516-24545586,
24546105-24546252
Length = 493
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 498 VAATAGILARSAEQFYADSPFYIFIRNEKTKLVTFSAVVYD 620
VAA IL F +SP ++F ++EK K ++ +YD
Sbjct: 196 VAAVPAILQFVLMLFLPESPRWLFWKDEKAKAISVLEKIYD 236
>03_05_0284 -
22712390-22712899,22712978-22713304,22713742-22714091,
22714176-22714401,22714655-22714728,22715813-22716152
Length = 608
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 291 FSPDEANFALMIDSSDDKKENEVVIRSRFGHEQSRMLKDALNSLP 425
++ D+ D + DK N ++ S G+E L D LNSLP
Sbjct: 516 YAHDDDGLVGAFDRASDKLANAIIRSSTVGNELPDDLWDNLNSLP 560
>12_01_0242 + 1812891-1812897,1814073-1814830
Length = 254
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 417 SLPNPGVYVDSVLHNVKI 470
SLP+P +Y+D + HN KI
Sbjct: 72 SLPDPDMYIDKIDHNSKI 89
>09_01_0028 +
486800-486890,486928-488009,488825-489190,489342-489692
Length = 629
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 477 NEFGTEAVAATAGILARSAEQFYADSPFYIFIRNEKTKLVTFSAVVYD 620
N F E +A+T+ L R++E Y P +RN +K SA V D
Sbjct: 444 NRFQKELIASTSYKLTRTSENMYLVEPNGGPVRNYGSKAFIVSANVLD 491
>01_01_0790 +
6135910-6136045,6136316-6136497,6136604-6136749,
6136836-6137103,6137256-6137558,6137657-6137905
Length = 427
Score = 27.9 bits (59), Expect = 7.8
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = +3
Query: 219 FPKMDLESNVNLDKA-LKAVGIKSMFSP---DEANFALMIDSSDDKKENEVVIRSRFGHE 386
F K+D++ + L +A L A+ I F D+ + I D N++V + F
Sbjct: 157 FHKIDMDESQTLSRAELHALIIGINFEEVDFDKNDAVDKIMDDFDTSGNDIVEEAEFVSG 216
Query: 387 QSRMLKDALNSLPNPGVY 440
R L +A S+P G Y
Sbjct: 217 MKRWLNEAKRSVPTSGAY 234
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,392,203
Number of Sequences: 37544
Number of extensions: 289855
Number of successful extensions: 933
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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