Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0477
         (674 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      52   3e-15
SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      40   8e-09
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      52   6e-07
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)                 31   1.1  
SB_23712| Best HMM Match : HSBP1 (HMM E-Value=0.35)                    30   1.5  
SB_42083| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_1075| Best HMM Match : rve (HMM E-Value=0.0089)                     30   2.0  
SB_51651| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   3.4  
SB_24132| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_13949| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_1523| Best HMM Match : T-box (HMM E-Value=0.041)                    29   4.5  
SB_13485| Best HMM Match : HSBP1 (HMM E-Value=1.4)                     28   7.9  
SB_1587| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  
SB_42872| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 52.0 bits (119), Expect(2) = 3e-15
 Identities = 32/75 (42%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
 Frame = +3

Query: 417 SLPNPGVYVDSVLHNVKITVNEFGTEAVAATAGI------LARSAEQFYADSPFYIFIRN 578
           SLP   ++V +VLH   + VNE GTEA AATA I      + R    F AD PF   I++
Sbjct: 269 SLPPEHLFVSAVLHKAFVEVNEEGTEAAAATAAIMMMRCAIMREPLVFRADHPFLFLIQH 328

Query: 579 EKTKLVTFSAVVYDP 623
            K+K V F   V +P
Sbjct: 329 CKSKCVLFMGRVMNP 343



 Score = 47.2 bits (107), Expect(2) = 3e-15
 Identities = 28/100 (28%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
 Frame = +3

Query: 24  FDYIFSEKDGLHMIALPYNDSTTVMYALKPRLPMKLSLFDLMKKLDYNKIDELINKMNER 203
           F Y+ S+K    ++ LPY D+   M  + P     L+ F+  + L ++K+ ++ N ++ +
Sbjct: 168 FKYLHSDKYKCKLLELPYVDTQLSMVLVLPDETEGLARFE--QDLTHDKMTDIFNSVSSQ 225

Query: 204 KAV---VRFPKMDLESNVNLDKALKAVGIKSMFSPDEANF 314
           +     V  PK  + S   L++AL+ +G+K MF    A+F
Sbjct: 226 RPADVEVYIPKFKMTSEFKLNEALQELGMKKMFDQAAADF 265


>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 40.3 bits (90), Expect(2) = 8e-09
 Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = +3

Query: 402 KDALNSLPNPGVYVDSVLHNVKITVNEFGTEAVAAT-AGILARSAEQ---FYADSPFYIF 569
           K  L+ +    + V  V+H   + VNE GT A AAT  GI+  S      FYA+ PF   
Sbjct: 299 KADLSGISAAPLVVSEVVHKAFVEVNEEGTIAAAATGVGIMLMSMPMNPVFYANHPFLFL 358

Query: 570 IRNEKTKLVTF 602
           IR+  T  V F
Sbjct: 359 IRHNDTGAVLF 369



 Score = 37.1 bits (82), Expect(2) = 8e-09
 Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
 Frame = +3

Query: 21  DFDYIFSEKDGLHMIALPYNDSTTVMYALKPRLPMKLSLFD--LMKKLDYNKIDELINKM 194
           +F Y+ S   G  ++ LPY      M  L P     L   +  L K+     +  L N  
Sbjct: 204 EFRYLESSTLGCQIVELPYAGEKLSMVVLLPNEVDGLGKLESSLNKETLQEAMTSLRNSH 263

Query: 195 NERKAVVRFPKMDLESNVNLDKALKAVGIKSMFSPDEANFA 317
            E +  V  PK  L    +L + LK +G   +FSP +A+ +
Sbjct: 264 PE-EVEVTLPKFTLTQEFSLGETLKGMGASDLFSPGKADLS 303


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
 Frame = +3

Query: 432 GVYVDSVLHNVKITVNEFGTEAVAATAGILARSA----EQFYADSPFYIFIRNEKTKLVT 599
           G+YV S +H   I VNE GT A A T  ++A+ +    E FYAD PF   I ++ +  + 
Sbjct: 277 GLYVSSAIHKAHIEVNERGTVAAATTGVVMAKRSLDMNEVFYADHPFLFSIHHKPSSAIL 336

Query: 600 FSAVVYDPT 626
           F   V  PT
Sbjct: 337 FLGKVMQPT 345


>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
          Length = 419

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = +3

Query: 231 DLESNVNLDKALKAVGIKSMFSPDEANFALMIDSSDDKKENEVVIRSRFGHEQSRMLKDA 410
           D  S+ N   +    G  ++ +P EA+   M +  +DKK   V      G    R   D 
Sbjct: 26  DPSSSTNRGNSTPDGGSNAVDTPTEASGDKMRNGQEDKKAYSVTSSQSPGLSSGRSSSDR 85

Query: 411 LNSLPNPG 434
           ++SLP+ G
Sbjct: 86  MDSLPDTG 93


>SB_23712| Best HMM Match : HSBP1 (HMM E-Value=0.35)
          Length = 437

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = +3

Query: 123 MKLSLFDLMKKLDYNKIDELINKMNERKAVVRFPKMDLESNVNLDKALK 269
           M  SLF+ M     +++D+L+ K++  KA + F + ++E    ++K +K
Sbjct: 46  MMRSLFESMVSQTSSRVDDLVEKVSGLKASIEFTQSEVERFGPINKKVK 94


>SB_42083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 489

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +3

Query: 123 MKLSLFDLMKKLDYNKIDELINKMNERKAVVRFPKMDLESNVNLDKALK 269
           M  S+F+ M     N++D+L+ K++  KA + F + D+E     +K +K
Sbjct: 188 MMRSVFESMVSQISNRVDDLVEKVSGLKASLEFTQSDVERFGPTNKKVK 236


>SB_1075| Best HMM Match : rve (HMM E-Value=0.0089)
          Length = 1617

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +1

Query: 478 TNSERKLWRRRP--GYWRDQLNSSTRTPRSTYSFGTRRPN**PLVPSYTILRYRNSSLPT 651
           +  E + W   P  GYW  QLN +    RS+ SF T R     L P  T L    S LP+
Sbjct: 195 STKESRRWLSEPSYGYWPQQLNLAVCPGRSSPSFLTMR-----LSPLPTPLATEESDLPS 249

Query: 652 N 654
           +
Sbjct: 250 D 250


>SB_51651| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 431

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 613 YTILRYRNSSLPTNYLIINV 672
           Y +L+YRN+    NYLI+N+
Sbjct: 90  YVVLKYRNTKTAFNYLIVNL 109


>SB_24132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = +3

Query: 123 MKLSLFDLMKKLDYNKIDELINKMNERKAVVRFPKMDLESNVNLDKALK 269
           M  SLF+ M     +++D+L+ K++  KA + F + ++E    ++K +K
Sbjct: 46  MMRSLFESMVSQMSSRVDDLVEKVSGLKASLEFTQSEVERFGPINKKVK 94


>SB_13949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
 Frame = +3

Query: 237 ESNVNLDKALKAVGIKSMFSP-------DEANFALMIDSSDDKKENEVVIRSRFGHEQSR 395
           E  + L KA + +   S+FSP       D+ +   +++   D K+ E ++  R   +   
Sbjct: 139 ELEIKLRKAFRQLKEGSIFSPMTFVKEADDKHIKSLVEEQVDMKKLEKLLEQRNRFDNKM 198

Query: 396 MLKDALNSLPNPGVYVDSVLHNVKITVNEF 485
            L+ +  S+P+  +  DSVL +     N F
Sbjct: 199 ALEASPVSIPSKIITSDSVLTDPTAIFNAF 228


>SB_1523| Best HMM Match : T-box (HMM E-Value=0.041)
          Length = 227

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +3

Query: 387 QSRMLKDALNSLPNPGVYVDSVLHNVKITVNEFGTEAVAATAGILARSAEQFYADSPFYI 566
           QSR+   +     + G+ V+  +H++     E GTE +   AG   +  +QF  D  F  
Sbjct: 100 QSRVPPASTFGSESDGIRVELQMHDLWRRFYELGTEMIITKAGSTKKKNKQFCEDHQFQA 159

Query: 567 FI 572
            +
Sbjct: 160 IV 161


>SB_13485| Best HMM Match : HSBP1 (HMM E-Value=1.4)
          Length = 193

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/46 (28%), Positives = 28/46 (60%)
 Frame = +3

Query: 132 SLFDLMKKLDYNKIDELINKMNERKAVVRFPKMDLESNVNLDKALK 269
           SLF+ M     +++D+L+ K++  KA + F + ++E    ++K +K
Sbjct: 49  SLFESMVSQISSRVDDLVEKVSGLKASLEFTQKEVERFGPINKEVK 94


>SB_1587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1497

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -2

Query: 352 FSFLSSDESIIKAKLASSGLNIDLIPTAFSALSRLT 245
           FS L+S ++++ AK  ++  ++  +PTA   LSR T
Sbjct: 74  FSGLTSRQNLLFAKCPTTPQSLHFLPTALQLLSRAT 109


>SB_42872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 55

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 216 RFPKMDLESNVNLDKALKAVGIKSMFSPDEANFALMIDSSDD 341
           ++P+  L  NVN  + L     +SM +P  +   L+ D+ DD
Sbjct: 5   KYPRKALTQNVNAPELLTDDAHQSMMTPGGSMVKLLTDNGDD 46


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,325,571
Number of Sequences: 59808
Number of extensions: 355343
Number of successful extensions: 1057
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)