Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0476
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    27   2.5  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    27   3.3  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    26   4.3  

>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 567 IYSLSF*WGKNFPILQDKKYHF 632
           IYS+ + W + FPIL    YHF
Sbjct: 330 IYSILYLWFEAFPILFTSVYHF 351


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/60 (23%), Positives = 26/60 (43%)
 Frame = -3

Query: 500 KNHRRNVFSVRIHLENXXXXXXXXXXXXLRLR*TERVINARQNAKLTARYDAEMCCMVTY 321
           + HR ++FS+ IH  +            +R+  TE +    +N         ++CCM T+
Sbjct: 15  RGHRLSIFSIHIH-PDGSRIATGGLDGTIRIWSTEAINRENENENENEDLPKQLCCMSTH 73


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 567 IYSLSF*WGKNFPILQDKKYHF 632
           +YS+ + W + FPIL    YHF
Sbjct: 330 VYSILYLWFEAFPILFTTVYHF 351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,430,927
Number of Sequences: 5004
Number of extensions: 44234
Number of successful extensions: 60
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)