Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0475
(643 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri... 215 1e-54
UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B... 211 9e-54
UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P... 203 2e-51
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ... 176 3e-43
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ... 171 9e-42
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ... 171 9e-42
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ... 170 3e-41
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ... 169 5e-41
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498... 167 2e-40
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ... 165 1e-39
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI... 158 1e-37
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI... 158 1e-37
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;... 157 3e-37
UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;... 155 9e-37
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ... 149 4e-35
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|... 136 4e-31
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp... 136 4e-31
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre... 136 4e-31
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol... 135 7e-31
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ... 131 1e-29
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ... 130 3e-29
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na... 128 9e-29
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na... 125 1e-27
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI... 124 2e-27
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|... 123 3e-27
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|... 123 3e-27
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R... 123 3e-27
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R... 123 3e-27
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro... 120 4e-26
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or... 117 3e-25
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F... 115 1e-24
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob... 110 3e-23
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu... 101 1e-20
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N... 97 4e-19
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ... 91 2e-17
UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa... 88 1e-16
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co... 87 3e-16
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae... 80 4e-14
UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap... 80 5e-14
UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI... 75 2e-12
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ... 73 6e-12
UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu... 71 2e-11
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 71 3e-11
UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri... 68 2e-10
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub... 68 2e-10
UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym... 67 3e-10
UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th... 67 3e-10
UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl... 66 9e-10
UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di... 64 3e-09
UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|... 63 5e-09
UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti... 63 6e-09
UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ... 61 3e-08
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M... 60 4e-08
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=... 59 8e-08
UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl... 59 8e-08
UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My... 59 8e-08
UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;... 59 1e-07
UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c... 58 1e-07
UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ... 58 1e-07
UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B... 58 2e-07
UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver... 57 3e-07
UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A... 57 4e-07
UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|... 56 5e-07
UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 56 5e-07
UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4... 56 7e-07
UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ... 55 2e-06
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=... 54 2e-06
UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=... 53 7e-06
UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 51 2e-05
UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype... 51 3e-05
UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit... 49 8e-05
UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1; Cela... 47 3e-04
UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxid... 46 6e-04
UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni... 46 0.001
UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.... 45 0.001
UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte... 44 0.003
UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1; Pach... 44 0.003
UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter... 44 0.004
UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Pl... 44 0.004
UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac... 43 0.005
UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ... 42 0.010
UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh... 42 0.013
UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil... 42 0.017
UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B... 40 0.039
UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;... 40 0.039
UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha... 39 0.12
UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; D... 38 0.16
UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob... 38 0.21
UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O... 38 0.21
UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri... 37 0.36
UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2; Eu... 37 0.36
UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5; Sulfol... 36 0.83
UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1; Te... 35 1.5
UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; P... 33 5.9
UniRef50_Q8II85 Cluster: Putative uncharacterized protein; n=2; ... 33 7.7
>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
subunit I - Periclimenes thermohydrophilus
Length = 217
Score = 215 bits (524), Expect = 1e-54
Identities = 118/207 (57%), Positives = 137/207 (66%)
Frame = -2
Query: 642 AGSKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDILFNRXXXXXXXX 463
AGSK +VFKFRSV +IVIAPA TGS++N+K AV T TN G S I +R
Sbjct: 12 AGSKKEVFKFRSVKSIVIAPASTGSESNSKMAVSNTDQTNSGMRSMVIPADRMLITVVMK 71
Query: 462 XXXXXIDEIPAKCSEKIARSTDLPLCAILDESGG*TVHPVPAPFSTILLEINNIREGGRS 283
I+E PAKC+EKI STD P CAI SGG TVHPVP P STI L + ++EGG +
Sbjct: 72 FTAPKIEETPAKCNEKIPMSTDAPACAIPLASGGYTVHPVPTPLSTIPLNKSKVKEGGSN 131
Query: 282 QNLILFIRGNAISGAPSIRGTNQFPNPPXXXXXXXXXXXXKACAVTIVL*I*SSPINDPG 103
QNL+LFIRGNA+SGAP++ GTNQFPNPP KA AVT+ L I S PI PG
Sbjct: 132 QNLMLFIRGNAMSGAPNMSGTNQFPNPPIMIGMTMKKIITKAWAVTMTL-IWSFPIKLPG 190
Query: 102 FPNSARIKSLKDVPIIPDQIPKIKYNV 22
PNSARIKSL DVP +P PK+KYNV
Sbjct: 191 CPNSARIKSLSDVPTMPAHAPKMKYNV 217
>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
cynthia ricini (Indian eri silkmoth)
Length = 510
Score = 211 bits (516), Expect = 9e-54
Identities = 118/211 (55%), Positives = 125/211 (59%)
Frame = +2
Query: 11 RKIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXX 190
+ IGTLY AELG PGSLIGDDQIYNTIVTAHA
Sbjct: 10 KDIGTLYFIFGIWAGMVGTSLSLLIRAELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMP 69
Query: 191 XXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPL 370
N LVPL+LGAPD+AFPR+NN+ F IVENGAGTG TVYPPL
Sbjct: 70 IMIGGFGNWLVPLMLGAPDMAFPRMNNMSFWLLPPSLTLLISSSIVENGAGTGWTVYPPL 129
Query: 371 SSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 550
SSNIAH G SVDLAIFSLHLAGISS SFDQ+PLFV AVGITA
Sbjct: 130 SSNIAHGGSSVDLAIFSLHLAGISSILGAINFITTIINMRMNNLSFDQMPLFVWAVGITA 189
Query: 551 FXXXXXXXXXAGAITILLTDRNLNTSFFDPA 643
F AGAIT+LLTDRNLNTSFFDPA
Sbjct: 190 FLLLLSLPVLAGAITMLLTDRNLNTSFFDPA 220
>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
Panarthropoda|Rep: Cytochrome c oxidase subunit I -
Pagyris cymothoe
Length = 487
Score = 203 bits (496), Expect = 2e-51
Identities = 109/184 (59%), Positives = 117/184 (63%)
Frame = +2
Query: 92 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 271
ELG PGSLIGDDQIYNTIVTAHA N L+PL+LGAPD+AFPR+NN
Sbjct: 13 ELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGAPDMAFPRMNN 72
Query: 272 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 451
+ F IVENGAGTG TVYPPLSSNIAH G SVDLAIFSLHLAGISS
Sbjct: 73 MSFWLLPPSLILLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLHLAGISSIL 132
Query: 452 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSF 631
SFDQ+PLF+ AVGITA AGAIT+LLTDRNLNTSF
Sbjct: 133 GAINFITTIINMRINKMSFDQMPLFIWAVGITALLLLLSLPVLAGAITMLLTDRNLNTSF 192
Query: 632 FDPA 643
FDPA
Sbjct: 193 FDPA 196
>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
rubiginosus
Length = 504
Score = 176 bits (429), Expect = 3e-43
Identities = 102/211 (48%), Positives = 115/211 (54%)
Frame = +2
Query: 11 RKIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXX 190
+ IGTLY AELG PG+L+GDDQIYN IVTAHA
Sbjct: 14 KDIGTLYLIFGAWAGMIGTALSLLIRAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVMP 73
Query: 191 XXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPL 370
N LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYPPL
Sbjct: 74 IMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLXPPSFLLLLASSTVEAGAGTGWTVYPPL 133
Query: 371 SSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 550
+ N+AH G SVDLAIFSLHLAGISS S Q PLFV +V ITA
Sbjct: 134 AGNLAHAGASVDLAIFSLHLAGISSILGAINFITTAINMKPPAISQYQTPLFVWSVLITA 193
Query: 551 FXXXXXXXXXAGAITILLTDRNLNTSFFDPA 643
A IT+LLTDRNLNT+FFDPA
Sbjct: 194 VLLLLSLPVLAAGITMLLTDRNLNTTFFDPA 224
>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Homalopoma maculosa
Length = 219
Score = 171 bits (417), Expect = 9e-42
Identities = 93/184 (50%), Positives = 106/184 (57%)
Frame = +2
Query: 92 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 271
ELG PGS IG+DQ+YN +VTAHA N LVPL+LGAPD+AFPR+NN
Sbjct: 23 ELGQPGSFIGNDQLYNVVVTAHAFVMIFFLVMPMMIGGFGNWLVPLMLGAPDMAFPRLNN 82
Query: 272 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 451
+ F VE+GAGTG TVYPPLS N AH G SVDLAIFSLHLAG+SS
Sbjct: 83 MSFWFLPPSLSLLLMSAAVESGAGTGWTVYPPLSGNTAHAGPSVDLAIFSLHLAGVSSIL 142
Query: 452 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSF 631
+ + LFV +V ITA AGAIT+LLTDRN NTSF
Sbjct: 143 GAVNFITTVINMRWGAMKIELVSLFVWSVKITAILLLLSLPVLAGAITMLLTDRNFNTSF 202
Query: 632 FDPA 643
FDPA
Sbjct: 203 FDPA 206
>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 516
Score = 171 bits (417), Expect = 9e-42
Identities = 98/211 (46%), Positives = 112/211 (53%)
Frame = +2
Query: 11 RKIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXX 190
+ IGTLY AEL PG+L+GDDQIYN IVTAHA
Sbjct: 13 KDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMP 72
Query: 191 XXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPL 370
N LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYPPL
Sbjct: 73 ILIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPL 132
Query: 371 SSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 550
+ N+AH G SVDL IFSLHLAG+SS S Q PLFV AV +TA
Sbjct: 133 AGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTTINMKPPTISQYQTPLFVWAVLVTA 192
Query: 551 FXXXXXXXXXAGAITILLTDRNLNTSFFDPA 643
A IT+LLTDRNLNT+FFDPA
Sbjct: 193 VLLLLSLPVLAAGITMLLTDRNLNTTFFDPA 223
>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
cellular organisms|Rep: Cytochrome c oxidase subunit I -
Pandaka lidwilli
Length = 507
Score = 170 bits (413), Expect = 3e-41
Identities = 97/210 (46%), Positives = 111/210 (52%)
Frame = +2
Query: 11 RKIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXX 190
+ IGTLY AEL PG+L+GDDQIYN IVTAHA
Sbjct: 2 KDIGTLYLIFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMP 61
Query: 191 XXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPL 370
N L+PL++GAPD+AFPR+NN+ F +E GAGTG TVYPPL
Sbjct: 62 IMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGIEAGAGTGWTVYPPL 121
Query: 371 SSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 550
+ N+AH G SVDL IFSLHLAGISS S Q PLFV AV ITA
Sbjct: 122 AGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIMNMKPPAISQYQTPLFVWAVLITA 181
Query: 551 FXXXXXXXXXAGAITILLTDRNLNTSFFDP 640
A IT+LLTDRNLNT+FFDP
Sbjct: 182 VLLLLSLPVLAAGITMLLTDRNLNTTFFDP 211
>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Ophisurus macrorhynchos
Length = 546
Score = 169 bits (411), Expect = 5e-41
Identities = 96/211 (45%), Positives = 112/211 (53%)
Frame = +2
Query: 11 RKIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXX 190
+ IGTLY AEL PG+L+GDDQIYN IVTAHA
Sbjct: 13 KDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMP 72
Query: 191 XXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPL 370
N LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYPPL
Sbjct: 73 VMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPL 132
Query: 371 SSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 550
+ N+AH G SVDL IFSLHLAG+SS + Q PLFV +V +TA
Sbjct: 133 AGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAITQYQTPLFVWSVLVTA 192
Query: 551 FXXXXXXXXXAGAITILLTDRNLNTSFFDPA 643
A IT+LLTDRNLNT+FFDPA
Sbjct: 193 VLLLLSLPVLAAGITMLLTDRNLNTTFFDPA 223
>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
(Human)
Length = 513
Score = 167 bits (406), Expect = 2e-40
Identities = 95/211 (45%), Positives = 112/211 (53%)
Frame = +2
Query: 11 RKIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXX 190
+ IGTLY AELG PG+L+G+D IYN IVTAHA
Sbjct: 13 KDIGTLYLLFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTAHAFVMIFFMVMP 72
Query: 191 XXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPL 370
N LVPL++GAPD+AFPR+NN+ F +VE GAGTG TVYPPL
Sbjct: 73 IMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASAMVEAGAGTGWTVYPPL 132
Query: 371 SSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 550
+ N +H G SVDL IFSLHLAG+SS + Q PLFV +V ITA
Sbjct: 133 AGNYSHPGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQTPLFVWSVLITA 192
Query: 551 FXXXXXXXXXAGAITILLTDRNLNTSFFDPA 643
A IT+LLTDRNLNT+FFDPA
Sbjct: 193 VLLLLSLPVLAAGITMLLTDRNLNTTFFDPA 223
>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Placozoan sp. BZ2423
Length = 498
Score = 165 bits (400), Expect = 1e-39
Identities = 92/211 (43%), Positives = 112/211 (53%)
Frame = +2
Query: 11 RKIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXX 190
+ IG+LY EL +PGS++GDD +YN IVTAHA
Sbjct: 14 KDIGSLYLVFGALSGAIGTAFSMLIRLELSSPGSMLGDDHLYNVIVTAHAFVMIFFLVMP 73
Query: 191 XXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPL 370
N VPL++GAPD+AFPR+NNI F +VE GAGTG TVYPPL
Sbjct: 74 TMIGGFGNWFVPLMIGAPDMAFPRLNNISFWLLPPALFLLLGSSLVEQGAGTGWTVYPPL 133
Query: 371 SSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 550
+S AH G SVD+AIFSLHLAG+SS + ++PLFV +V ITA
Sbjct: 134 ASIQAHSGGSVDMAIFSLHLAGLSSILGAMNFITTVMNMRTPGMTMSRIPLFVWSVLITA 193
Query: 551 FXXXXXXXXXAGAITILLTDRNLNTSFFDPA 643
AGAIT+LLTDR NT+FFDPA
Sbjct: 194 ILLLLSLPVLAGAITMLLTDRYFNTTFFDPA 224
>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI8 (EC
3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
endonuclease aI8 precursor [Contains: Truncated
non-functional cytochrome oxidase 1; Intron-encoded
endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
fungus)
Length = 645
Score = 158 bits (383), Expect = 1e-37
Identities = 93/213 (43%), Positives = 109/213 (51%), Gaps = 2/213 (0%)
Frame = +2
Query: 11 RKIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 184
+ IGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 11 KDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMV 70
Query: 185 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 364
N LVP+++GAPD+AFPR+NNI F VE GAGTG TVYP
Sbjct: 71 MPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYP 130
Query: 365 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 544
PLS +H G SVDLAIFSLHL+GISS + +LPLFV A+ +
Sbjct: 131 PLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFV 190
Query: 545 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA 643
TA AGAIT+LLTDRN NTSF+DPA
Sbjct: 191 TAILLLLSLPVLAGAITMLLTDRNFNTSFYDPA 223
>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI5 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI5 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 536
Score = 158 bits (383), Expect = 1e-37
Identities = 93/213 (43%), Positives = 109/213 (51%), Gaps = 2/213 (0%)
Frame = +2
Query: 11 RKIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 184
+ IGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 11 KDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMV 70
Query: 185 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 364
N LVP+++GAPD+AFPR+NNI F VE GAGTG TVYP
Sbjct: 71 MPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYP 130
Query: 365 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 544
PLS +H G SVDLAIFSLHL+GISS + +LPLFV A+ +
Sbjct: 131 PLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFV 190
Query: 545 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA 643
TA AGAIT+LLTDRN NTSF+DPA
Sbjct: 191 TAILLLLSLPVLAGAITMLLTDRNFNTSFYDPA 223
>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
melitaearum (Parasitoid wasp)
Length = 499
Score = 157 bits (380), Expect = 3e-37
Identities = 85/184 (46%), Positives = 104/184 (56%)
Frame = +2
Query: 92 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 271
ELG PGSLIG+DQIYN+IVT+HA N L+PL+LG+PD++FPR+NN
Sbjct: 24 ELGMPGSLIGNDQIYNSIVTSHAFIMIFFMVMPVMIGGFGNWLIPLMLGSPDMSFPRMNN 83
Query: 272 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 451
+ F + G GTG TVYPPLS + H G SVDL IFSLHLAG SS
Sbjct: 84 MSFWLLIPSLLLLILSMFINVGVGTGWTVYPPLSLILGHGGMSVDLGIFSLHLAGASSIM 143
Query: 452 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSF 631
+ D++ LF +V ITA AGAIT+LLTDRN+NTSF
Sbjct: 144 GAVNFITTILNMRSNLFNMDKMSLFSWSVFITAILLLLSLPVLAGAITMLLTDRNMNTSF 203
Query: 632 FDPA 643
FDP+
Sbjct: 204 FDPS 207
>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 527
Score = 155 bits (376), Expect = 9e-37
Identities = 88/213 (41%), Positives = 110/213 (51%), Gaps = 2/213 (0%)
Frame = +2
Query: 11 RKIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXX 184
+ IGTLY EL PG I G+ Q+YN ++TAHA
Sbjct: 14 KDIGTLYFIFGAIAGVMGTCFSVLIRMELARPGDQILGGNHQLYNVLITAHAFLMIFFMV 73
Query: 185 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 364
N VP+++GAPD+AFPR+NNI F +VE G+GTG TVYP
Sbjct: 74 MPAMIGGFGNWFVPILIGAPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYP 133
Query: 365 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 544
PLS +H G +VDLAIFSLHL+G+SS + +LPLFV +V +
Sbjct: 134 PLSGITSHSGGAVDLAIFSLHLSGVSSILGSINFITTIFNMRGPGMTMHRLPLFVWSVLV 193
Query: 545 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA 643
TAF AGAIT+LLTDRN NT+FFDPA
Sbjct: 194 TAFLLLLSLPVLAGAITMLLTDRNFNTTFFDPA 226
>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Chondrus crispus (Carragheen)
Length = 532
Score = 149 bits (362), Expect = 4e-35
Identities = 86/211 (40%), Positives = 109/211 (51%), Gaps = 2/211 (0%)
Frame = +2
Query: 11 RKIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 184
+ IGTLY EL P + L+G+ QIYN ++TAHA
Sbjct: 19 KDIGTLYLIFGAFSGVLGGCMSMLIRMELAQPSNHLLLGNHQIYNVLITAHAFLMIFFMV 78
Query: 185 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 364
N LVP+++G+PD+AFPR+NNI F +VE G GTG TVYP
Sbjct: 79 MPVMIGGFGNWLVPIMIGSPDMAFPRLNNISFWLLPPSLCLLLMSALVEVGVGTGWTVYP 138
Query: 365 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 544
PLSS +H G +VDLAIFSLH++G SS S ++PLFV ++ +
Sbjct: 139 PLSSIQSHSGGAVDLAIFSLHISGASSILGAVNFISTILNMRSPGQSMYRIPLFVWSILV 198
Query: 545 TAFXXXXXXXXXAGAITILLTDRNLNTSFFD 637
TAF AGAIT+LLTDRN NTSFFD
Sbjct: 199 TAFLLLLAVPVLAGAITMLLTDRNFNTSFFD 229
>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
group|Rep: Endonuclease - Saccharomyces servazzii
(Yeast)
Length = 675
Score = 136 bits (329), Expect = 4e-31
Identities = 80/186 (43%), Positives = 99/186 (53%), Gaps = 2/186 (1%)
Frame = +2
Query: 92 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 265
EL PGS L G+ Q++N +V HA N ++PL++GA D++FPRI
Sbjct: 39 ELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLAMPALIGGFGNYMLPLMIGATDMSFPRI 98
Query: 266 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 445
N+I F +VE+GAGTG TVYPPLSS AH G SVDLAIFSLHL ISS
Sbjct: 99 NSIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFSLHLTSISS 158
Query: 446 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 625
S ++PLFV A+ ITAF + IT+LL DRN NT
Sbjct: 159 LLGAINFIVTTLNMRTNGMSMHKMPLFVWAIFITAFLLLLSLPVLSAGITMLLMDRNFNT 218
Query: 626 SFFDPA 643
SFF+ A
Sbjct: 219 SFFEVA 224
>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
precursor (DNA endonuclease I-SceIV) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
endonuclease I-SceIV) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
Length = 630
Score = 136 bits (329), Expect = 4e-31
Identities = 80/184 (43%), Positives = 97/184 (52%), Gaps = 2/184 (1%)
Frame = +2
Query: 92 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 265
EL PGS L G+ Q++N +V HA N L+PL++GA D AFPRI
Sbjct: 39 ELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGATDTAFPRI 98
Query: 266 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 445
NNI F +VE+GAGTG TVYPPLSS AH G SVDLAIF+LHL ISS
Sbjct: 99 NNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFALHLTSISS 158
Query: 446 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 625
+ +LPLFV ++ ITAF + IT+LL DRN NT
Sbjct: 159 LLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLLSLPVLSAGITMLLLDRNFNT 218
Query: 626 SFFD 637
SFF+
Sbjct: 219 SFFE 222
>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
precursor (DNA endonuclease I- SceII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI4 precursor (DNA
endonuclease I- SceII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 556
Score = 136 bits (329), Expect = 4e-31
Identities = 80/184 (43%), Positives = 97/184 (52%), Gaps = 2/184 (1%)
Frame = +2
Query: 92 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 265
EL PGS L G+ Q++N +V HA N L+PL++GA D AFPRI
Sbjct: 39 ELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGATDTAFPRI 98
Query: 266 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 445
NNI F +VE+GAGTG TVYPPLSS AH G SVDLAIF+LHL ISS
Sbjct: 99 NNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFALHLTSISS 158
Query: 446 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 625
+ +LPLFV ++ ITAF + IT+LL DRN NT
Sbjct: 159 LLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLLSLPVLSAGITMLLLDRNFNT 218
Query: 626 SFFD 637
SFF+
Sbjct: 219 SFFE 222
>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
Cytochrome oxidase subunits 1 and 2 polyprotein -
Phaeosphaeria nodorum SN15
Length = 789
Score = 135 bits (327), Expect = 7e-31
Identities = 83/212 (39%), Positives = 100/212 (47%), Gaps = 1/212 (0%)
Frame = +2
Query: 11 RKIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXX 187
+ IG LY EL PG I D+Q+YN+I+TAHA
Sbjct: 13 KDIGVLYLIYALFAGLIGTAFSVLIRLELSGPGVQYIADNQLYNSIITAHAIIMIFFMVM 72
Query: 188 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 367
N L+PL LG PD+ FPR+NNI + +ENG GTG T+YPP
Sbjct: 73 PALIGGFGNFLLPLGLGGPDMGFPRLNNISYLLLIPSIVLFLFAGGIENGVGTGWTLYPP 132
Query: 368 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 547
LS +H G SVDLAIF LHL+GISS +L LF AV IT
Sbjct: 133 LSGIQSHSGPSVDLAIFGLHLSGISSLLGAMNFMTTTFNMRSPGIRLHKLILFAWAVVIT 192
Query: 548 AFXXXXXXXXXAGAITILLTDRNLNTSFFDPA 643
A AG IT++LTDRN NTSFF+ A
Sbjct: 193 AVLLLLSLPVLAGGITMVLTDRNFNTSFFEVA 224
>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Paracoccidioides brasiliensis
Length = 710
Score = 131 bits (317), Expect = 1e-29
Identities = 74/185 (40%), Positives = 95/185 (51%), Gaps = 1/185 (0%)
Frame = +2
Query: 92 ELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 268
EL PG I D+Q+YN+I+T+H N L+P+++G PD+AFPR+N
Sbjct: 66 ELSGPGIQYIEDNQLYNSIITSHGVIMIFFMVMPALIGGFGNFLLPILIGGPDMAFPRLN 125
Query: 269 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSX 448
N+ + I+ENG GTG T+YPPLS +H VDL IF LHL+GISS
Sbjct: 126 NVSYWLLIPSLFLFVFAAIIENGVGTGWTLYPPLSGIQSHSSMGVDLGIFGLHLSGISSL 185
Query: 449 XXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTS 628
+L LF AV ITA A AIT+LLTDRNLNTS
Sbjct: 186 LGAINFIATLLNMRSPGIKLHKLALFGWAVVITAVLLLLSLPVLAAAITMLLTDRNLNTS 245
Query: 629 FFDPA 643
F++ A
Sbjct: 246 FYELA 250
>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
n=1; Saccharomyces castellii|Rep: I-SceII DNA
endonuclease-like protein - Saccharomyces castellii
(Yeast)
Length = 598
Score = 130 bits (314), Expect = 3e-29
Identities = 76/186 (40%), Positives = 97/186 (52%), Gaps = 2/186 (1%)
Frame = +2
Query: 92 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 265
EL PG L G++Q++N +V HA N ++PL++GA D AFPRI
Sbjct: 39 ELAAPGQQYLHGNNQLFNVLVVGHAILMIFFMVMPALIGGFGNYMLPLMIGATDTAFPRI 98
Query: 266 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 445
NNI F +VE+GAGTG TVYPPL+S AH G SVDLAIF+LH+ ISS
Sbjct: 99 NNIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLASIQAHSGPSVDLAIFALHMTSISS 158
Query: 446 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 625
+ +LPLFV A+ ITA + +T+LL DRN NT
Sbjct: 159 LLGAINFIVTTLNMRTNGMTMHKLPLFVWAILITAVLLLLTLPVLSAGVTMLLLDRNFNT 218
Query: 626 SFFDPA 643
SFF+ A
Sbjct: 219 SFFEVA 224
>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
Naegleria gruberi
Length = 633
Score = 128 bits (310), Expect = 9e-29
Identities = 78/212 (36%), Positives = 93/212 (43%), Gaps = 2/212 (0%)
Frame = +2
Query: 11 RKIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 184
++IG LY EL PG L G+ YN I T H
Sbjct: 15 KRIGILYLFFGVFNGFLAVLLSMLMRLELAFPGDQILFGEYHFYNMITTVHGVLMLFVVV 74
Query: 185 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 364
N VP+++GAPD++FPR+NN F E G GTG TVYP
Sbjct: 75 MPILFGGFGNYFVPILIGAPDMSFPRLNNFSFWLLPGAILLAVLATYSEGGPGTGWTVYP 134
Query: 365 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 544
PLSS +H G SVDL IFS HL GI S LPLFV +V +
Sbjct: 135 PLSSLQSHSGASVDLMIFSFHLVGIGSIVAAINFICTIFYYKNEAMFNKDLPLFVWSVAV 194
Query: 545 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDP 640
T+F A AIT+LL DRN NTSF+DP
Sbjct: 195 TSFLVIVAIPVLAAAITLLLFDRNFNTSFYDP 226
>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
Naupactini|Rep: Cytochrome c oxidase subunit I -
Galapaganus collaris
Length = 406
Score = 125 bits (301), Expect = 1e-27
Identities = 72/139 (51%), Positives = 81/139 (58%)
Frame = +2
Query: 227 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 406
L LGAPD FPR N+ F VE GAGTG TV PPLS+NIAH G SVD
Sbjct: 4 LXLGAPDXXFPRXINMSFWFLPPXLSFFLXSSXVEKGAGTGWTVSPPLSANIAHEGSSVD 63
Query: 407 LAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 586
LAIFSLH+AG+ S + ++PLFV AV ITA AG
Sbjct: 64 LAIFSLHMAGVXSILGAINFISTVLNMRPSGMTPXRMPLFVWAVEITAILLLLSLPVLAG 123
Query: 587 AITILLTDRNLNTSFFDPA 643
AIT+LLTDRN+NTSFFDPA
Sbjct: 124 AITMLLTDRNINTSFFDPA 142
>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI4 (EC
3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
intron-encoded endonuclease aI4 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 530
Score = 124 bits (298), Expect = 2e-27
Identities = 77/194 (39%), Positives = 91/194 (46%), Gaps = 2/194 (1%)
Frame = +2
Query: 11 RKIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 184
+ IGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 11 KDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMV 70
Query: 185 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 364
N LVP+++GAPD+AFPR+NNI F VE GAGTG TVYP
Sbjct: 71 MPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYP 130
Query: 365 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 544
PLS +H G SVDLAIFSLHL+GISS + +LPLFV A+ +
Sbjct: 131 PLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFV 190
Query: 545 TAFXXXXXXXXXAG 586
TA AG
Sbjct: 191 TAILLLLSLPVLAG 204
>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
Length = 763
Score = 123 bits (297), Expect = 3e-27
Identities = 67/178 (37%), Positives = 93/178 (52%)
Frame = +2
Query: 101 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 280
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 281 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 460
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 461 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFF 634
+ +LPLFV +V ITA A +T+LL DRN NTSFF
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFF 238
>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
Length = 676
Score = 123 bits (297), Expect = 3e-27
Identities = 67/178 (37%), Positives = 93/178 (52%)
Frame = +2
Query: 101 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 280
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 281 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 460
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 461 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFF 634
+ +LPLFV +V ITA A +T+LL DRN NTSFF
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFF 238
>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
Cox-i3 protein - Candida stellata (Yeast)
Length = 588
Score = 123 bits (297), Expect = 3e-27
Identities = 67/178 (37%), Positives = 93/178 (52%)
Frame = +2
Query: 101 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 280
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 281 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 460
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 461 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFF 634
+ +LPLFV +V ITA A +T+LL DRN NTSFF
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFF 238
>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
Cox-i2 protein - Candida stellata (Yeast)
Length = 586
Score = 123 bits (297), Expect = 3e-27
Identities = 67/178 (37%), Positives = 93/178 (52%)
Frame = +2
Query: 101 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 280
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 281 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 460
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 461 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFF 634
+ +LPLFV +V ITA A +T+LL DRN NTSFF
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFF 238
>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
group|Rep: COX1-i5 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 608
Score = 120 bits (288), Expect = 4e-26
Identities = 73/186 (39%), Positives = 93/186 (50%), Gaps = 2/186 (1%)
Frame = +2
Query: 92 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 265
EL N GS L G+ Q +N ++TAHA N L+PL+LGA D+AF R+
Sbjct: 44 ELANTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGGFGNYLMPLMLGASDMAFARL 103
Query: 266 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 445
NNI F +VE GAGTG TVY PL+ +H G +VDLAIFSLHL+G SS
Sbjct: 104 NNISFWLLVPSLILILTSALVEAGAGTGWTVYFPLAGIQSHSGPAVDLAIFSLHLSGFSS 163
Query: 446 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 625
++ +PLF AV TA A +T+ + DRN NT
Sbjct: 164 LLGAINFITTFINMRTIGMKYENVPLFAWAVLFTAILLLLSLPVLAAGLTMGIFDRNFNT 223
Query: 626 SFFDPA 643
SFF+ A
Sbjct: 224 SFFEYA 229
>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
(strain CCS1)
Length = 628
Score = 117 bits (281), Expect = 3e-25
Identities = 64/187 (34%), Positives = 93/187 (49%), Gaps = 2/187 (1%)
Frame = +2
Query: 89 AELGNPGSLIG--DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 262
A LG L G D ++N ++T H N +PL++GAPD+AFPR
Sbjct: 143 ALLGTMDQLDGNPDGHLWNVLITGHGVLMMFFVVIPALFGGFGNYFMPLMIGAPDMAFPR 202
Query: 263 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 442
+NN+ + +++ GAG G T YPP+S+ R+VD AIF++H++G S
Sbjct: 203 LNNLSYWMYVAGTCLAFCSVMIDGGAGPGWTFYPPISAQGVETSRAVDFAIFAVHVSGAS 262
Query: 443 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 622
S + ++PLF +V +TA+ AGAIT+LLTDRN
Sbjct: 263 SILGSINFITTFLNMRAPGMTLHKVPLFAWSVFVTAWLLLLSLPVLAGAITMLLTDRNFG 322
Query: 623 TSFFDPA 643
T+FFDPA
Sbjct: 323 TTFFDPA 329
>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Trichoderma reesei (Hypocrea jecorina)
Length = 635
Score = 115 bits (276), Expect = 1e-24
Identities = 77/216 (35%), Positives = 99/216 (45%), Gaps = 5/216 (2%)
Frame = +2
Query: 11 RKIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXX 187
+ IGTLY EL PG I ++Q+YN+I+TAHA
Sbjct: 41 KDIGTLYLIFALFSGLLGTAFSVLIRLELSGPGVQFIANNQLYNSIITAHAILMIFFMVM 100
Query: 188 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV--- 358
N L+PL++G PD+AFPR+NNI F I+E G GTG T+
Sbjct: 101 PALIGGFGNFLMPLMIGGPDMAFPRLNNISFWLLPPSLLLLVFSAIIEGGVGTGWTLLKD 160
Query: 359 -YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 535
YPPLS +H G SVDLAIF+LHL+G+SS +L LF A
Sbjct: 161 KYPPLSGLQSHSGPSVDLAIFALHLSGVSSLLGSINFITTVANMRTPGIKLHKLALFGWA 220
Query: 536 VGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA 643
+ IT++LTDRN NTSFF+ A
Sbjct: 221 TWSSRSRYFL-------GITMVLTDRNFNTSFFEVA 249
>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
Alphaproteobacteria|Rep: Cytochrome-c oxidase -
Sphingomonas sp. SKA58
Length = 556
Score = 110 bits (264), Expect = 3e-23
Identities = 66/175 (37%), Positives = 88/175 (50%), Gaps = 4/175 (2%)
Frame = +2
Query: 131 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 310
++N ++TAH N VP+++GAPD+AFPR+NNI F
Sbjct: 93 LWNVLITAHGLIMVFFMVMPAMIGGFGNWFVPIMIGAPDMAFPRMNNISFWLLIPAFALL 152
Query: 311 XXXXIVE----NGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXX 478
V NGAGTG TVY PLS++ G +VD+AI SLH+AG SS
Sbjct: 153 LGSTFVPGGTGNGAGTGWTVYAPLSTS-GSAGPAVDMAILSLHIAGASSILGAINFITTI 211
Query: 479 XXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA 643
+ ++PLFV +V +TAF A AIT+LLTDRN T+F+D A
Sbjct: 212 LNMRAPGMTLHKMPLFVWSVLVTAFLLLLALPVLAAAITMLLTDRNFGTTFYDAA 266
>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
Leishmania tarentolae (Sauroleishmania tarentolae)
Length = 549
Score = 101 bits (242), Expect = 1e-20
Identities = 57/177 (32%), Positives = 77/177 (43%)
Frame = +2
Query: 107 GSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXX 286
G L GD Q YN ++T+H N +P++ G PD+ FPR+NN+ F
Sbjct: 48 GILFGDYQFYNVLITSHGLIMVFAFIMPVMMGGLVNYFIPVMAGFPDMVFPRLNNMSFWM 107
Query: 287 XXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXX 466
+ E G G G T+YP L H + D +F++HL GISS
Sbjct: 108 YLAGFGCVVNGFLTEEGMGVGWTLYPTLICIDFHSSLACDFVMFAVHLLGISSILNSINL 167
Query: 467 XXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFD 637
SF LF+ A ITA AG +T++L DRN NTSF+D
Sbjct: 168 LGTLFCCRRKFFSFLSWSLFIWAALITAILLIITLPVLAGGVTLILCDRNFNTSFYD 224
>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
Nematoda|Rep: Cytochrome c oxidase subunit I -
Onchocerca volvulus
Length = 548
Score = 96.7 bits (230), Expect = 4e-19
Identities = 61/214 (28%), Positives = 86/214 (40%), Gaps = 2/214 (0%)
Frame = +2
Query: 2 IGTRKIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXX 175
+ + IGT Y EL +PG G Q+YN+++T H
Sbjct: 19 VNHKTIGTYYIVLGYWAGLGGSVLSMLIRFELSSPGGHLFFGSGQVYNSVLTMHGVLMIF 78
Query: 176 XXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*T 355
N ++PL+LGAP++AFPR+N + F + G G+ T
Sbjct: 79 FLVMPILIGGFGNWMLPLMLGAPEMAFPRVNALSFWFTFVALLMVYQSFFIGGGPGSSWT 138
Query: 356 VYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 535
YPPLS S+D I LH GI S + DQ+ +FV
Sbjct: 139 FYPPLSVE-GQPELSLDTMILGLHTVGIGSLLGAINFMVTTQNMRSTAVTLDQISMFVWT 197
Query: 536 VGITAFXXXXXXXXXAGAITILLTDRNLNTSFFD 637
+T+F AG++ LL DRN NTSF+D
Sbjct: 198 SYLTSFLLVLSVPVLAGSLLFLLLDRNFNTSFYD 231
>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
borealis
Length = 513
Score = 91.5 bits (217), Expect = 2e-17
Identities = 49/95 (51%), Positives = 57/95 (60%)
Frame = +2
Query: 89 AELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 268
AELG PG+L+GDDQ N IVTAHA N LVPL++GAPD+AFPR+N
Sbjct: 40 AELGQPGTLLGDDQXXNVIVTAHAFVMIFXMXMPIMIGGFGNWLVPLMIGAPDMAFPRMN 99
Query: 269 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS 373
N+ F VE GAGTG TVYPPL+
Sbjct: 100 NMSFWLLPPSFLLLLASSTVEAGAGTGWTVYPPLA 134
>UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1;
Watasenia scintillans|Rep: Cytochrome c oxidase subunit
I - Watasenia scintillans (Sparkling enope)
Length = 217
Score = 88.2 bits (209), Expect = 1e-16
Identities = 51/118 (43%), Positives = 61/118 (51%)
Frame = +2
Query: 92 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 271
ELG PGSL+ DDQ+YN +VTAH N LVPL+LGAPD+AFPR+NN
Sbjct: 24 ELGQPGSLLNDDQLYNVVVTAHGFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNN 83
Query: 272 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 445
+ F + G + PL G SVDLAIF LHLAG+SS
Sbjct: 84 MSFGFFPLHWHYYSFFTV--KGGLARDELSTPLYLVTISAGPSVDLAIFPLHLAGVSS 139
>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
unguis
Length = 573
Score = 87.4 bits (207), Expect = 3e-16
Identities = 56/214 (26%), Positives = 89/214 (41%), Gaps = 1/214 (0%)
Frame = +2
Query: 2 IGTRKIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXX 181
+ + IGT+Y EL +PG + +Y++I+T HA
Sbjct: 12 VNHKDIGTIYLYMGLWSGVFGLSLSHCMRIELSHPGEWLQVGYMYHSIMTMHAFMMIFFF 71
Query: 182 XXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVY 361
N +PL++ D++ PR+NN+ + G G G T+Y
Sbjct: 72 VMPTSIGGLGNWFIPLMIKIKDLSMPRLNNLSVWLALGSLFLMCMAFLSSGGLGCGWTMY 131
Query: 362 PPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQL-PLFV*AV 538
PPLS++ G +DLA+FSLH+AG+SS F L P+ + +
Sbjct: 132 PPLSNSEFMDGLPIDLAVFSLHMAGMSSIAGSINFLVTIFNMRMGALFFMSLNPMLIWTL 191
Query: 539 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP 640
T+ A +T+LL DR+ +TSF+ P
Sbjct: 192 FGTSILLVTSVPVLAAGLTLLLLDRHFSTSFYYP 225
>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
cretinus
Length = 153
Score = 80.2 bits (189), Expect = 4e-14
Identities = 39/65 (60%), Positives = 45/65 (69%)
Frame = +2
Query: 227 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 406
L+LGAPD+AFPR+NN+ F +VENGAGTG TVYPPLSS AH G SVD
Sbjct: 1 LMLGAPDMAFPRMNNMSFWMLPPSLTLLLSSSMVENGAGTGWTVYPPLSSGTAHAGASVD 60
Query: 407 LAIFS 421
LAI+S
Sbjct: 61 LAIYS 65
Score = 37.9 bits (84), Expect = 0.21
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = +1
Query: 526 CMSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF 633
CM C +Y TCFS S+Y IIN K KY IF
Sbjct: 97 CMICCNYCYFITSFFTCFSSSHYYIINWPKSKYFIF 132
>UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1;
Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I -
Aplidium nordmanni
Length = 227
Score = 79.8 bits (188), Expect = 5e-14
Identities = 64/182 (35%), Positives = 75/182 (41%)
Frame = +2
Query: 95 LGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNI 274
L G +IG QI VTA A L PL +GAP +A PR+ N+
Sbjct: 31 LSXXGQVIGXGQIXXVGVTAXALVMIFFFVMPTLXGGFGXXLXPLXVGAPXMAXPRLXNM 90
Query: 275 RFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXX 454
F + G G VYPP SS +AH +VDL IF LHLAGISS
Sbjct: 91 SFWLLPPSLXXLCLSVFIGXGVGXXWXVYPPXSSGLAHSSGAVDLGIFXLHLAGISSXLG 150
Query: 455 XXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFF 634
++ LF A AIT+L R N SFF
Sbjct: 151 SMNFLVTLGNMKXKGLNYGNFSLFCWXXVXXXXXLILSXPVLAAAITMLXXXRXXNXSFF 210
Query: 635 DP 640
P
Sbjct: 211 XP 212
>UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI2 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI2 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 533
Score = 74.5 bits (175), Expect = 2e-12
Identities = 48/126 (38%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
Frame = +2
Query: 11 RKIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 184
+ IGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 11 KDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMV 70
Query: 185 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 364
N LVP+++GAPD+AFPR+NNI F VE GAGTG TV
Sbjct: 71 MPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVKC 130
Query: 365 PLSSNI 382
LS I
Sbjct: 131 KLSQII 136
>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
Alveolata|Rep: Cytochrome c oxidase subunit 1 -
Plasmodium falciparum
Length = 476
Score = 72.9 bits (171), Expect = 6e-12
Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 1/171 (0%)
Frame = +2
Query: 131 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 310
+YN I T H N +P++ G+P++A+PRIN+I
Sbjct: 58 LYNMIFTIHGIIMIFFNIMPGLFGGFGNYFLPILCGSPELAYPRINSISLLLQPIAFVLV 117
Query: 311 XXXXIVENGAGTG*TVYPPLSSNIAHRGR-SVDLAIFSLHLAGISSXXXXXXXXXXXXXX 487
E G GTG T+YPPLS+++ +VD+ IF L ++G++S
Sbjct: 118 ILSTAAEFGGGTGWTLYPPLSTSLMSLSPVAVDVIIFGLLVSGVASIMSSLNFITTVMHL 177
Query: 488 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP 640
+ L + ++ IT+ G + +LL+D + NT FFDP
Sbjct: 178 RAKGLTLGILSVSTWSLIITSGMLLLTLPVLTGGVLMLLSDLHFNTLFFDP 228
>UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1;
Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit
1 - Munidopsis verrucosus
Length = 154
Score = 70.9 bits (166), Expect = 2e-11
Identities = 39/83 (46%), Positives = 48/83 (57%)
Frame = +2
Query: 365 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 544
PL+S+IAH G SVD+AIFSLHLAG+SS + D++PLF+ AV I
Sbjct: 72 PLASSIAHAGASVDMAIFSLHLAGVSSILGSVNFMTTVINMRAKGMTLDRVPLFIWAVFI 131
Query: 545 TAFXXXXXXXXXAGAITILLTDR 613
T AGAIT+LLTDR
Sbjct: 132 TTVLLLLSLPVLAGAITMLLTDR 154
Score = 35.1 bits (77), Expect = 1.5
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = +1
Query: 199 WRIWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKN 324
W IWKL P NK YKILT PL Y K+N
Sbjct: 28 WWIWKLINSANVSGPWYGFPANKQYKILTSAPLTYTPINKRN 69
>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 485
Score = 70.5 bits (165), Expect = 3e-11
Identities = 51/180 (28%), Positives = 73/180 (40%)
Frame = +2
Query: 104 PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 283
PG + D + YN ++T H N L+PL++GA D+AFPR+N + +
Sbjct: 2 PGMQVVDFKTYNYLLTGHGVGMLFWWAIAAHIGGFGNFLLPLMIGAKDVAFPRLNALSWW 61
Query: 284 XXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXX 463
I N T T YPP S N + L +F +HL G SS
Sbjct: 62 AFFAANVLFLMTLIPGNHIMTMWTGYPPFSLN--NDAGVTALYVFVMHLLGASSIATAVN 119
Query: 464 XXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA 643
+F + LFV + AGA+T+L D+ L T+FF+PA
Sbjct: 120 FLVTYITMRAPGYTFFKTNLFVHTLIAANVIQLVGVPSLAGAVTMLFLDKYLGTNFFNPA 179
>UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2;
Cystobacterineae|Rep: Cytochrome-c oxidase -
Anaeromyxobacter sp. Fw109-5
Length = 596
Score = 68.1 bits (159), Expect = 2e-10
Identities = 45/168 (26%), Positives = 65/168 (38%), Gaps = 1/168 (0%)
Frame = +2
Query: 134 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 313
Y I T H N L+PL++GA D+AFPR+N F
Sbjct: 86 YQQIFTTHGLVMIFFAVTPVLIGTFGNLLIPLMIGARDMAFPRLNMYSFWTFLLSQLLVL 145
Query: 314 XXXIVENG-AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXX 490
G AG G T Y PLS+N+ G L + ++ + G+SS
Sbjct: 146 ASFFAPLGSAGAGWTTYTPLSTNVGMPGMGQTLVVAAIFVTGVSSTMGAVNYITTVIRLR 205
Query: 491 XXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFF 634
++ +LPL + + +TA A +LL DR+ T FF
Sbjct: 206 APGMTYMRLPLTIWGLWLTAILNALFVPVLGSAALLLLLDRSFGTEFF 253
>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
terminal oxidase, subunit I - Haloquadratum walsbyi
(strain DSM 16790)
Length = 634
Score = 67.7 bits (158), Expect = 2e-10
Identities = 62/216 (28%), Positives = 85/216 (39%), Gaps = 8/216 (3%)
Frame = +2
Query: 11 RKIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXX 190
+ IG LY EL +PG + + YN+++T+H
Sbjct: 95 KDIGLLYGAFGLTAFAVGGLMVVLMRIELADPGMTVISNTFYNSLLTSHGITMLFLFATP 154
Query: 191 XXXXXXXN*LVPLILGAPDIAFPRINNIRF--XXXXXXXXXXXXXXIVE-NGAGTG*TVY 361
N L+PL++GA D+AFPRIN I F I E A TG T+Y
Sbjct: 155 IIAAFS-NYLIPLLIGADDMAFPRINAIAFWLLPPAALLIWAGFFPIPEVIPAQTGWTMY 213
Query: 362 PPLS-----SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 526
PLS N A+ G VDL + LHL+G+S+ S+ L +F
Sbjct: 214 TPLSVGEGMGNQANAG--VDLMLLGLHLSGVSATMGSINFIATIFTERGKNVSWANLDIF 271
Query: 527 V*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFF 634
+ + AI +LL DRN TSFF
Sbjct: 272 SWTILTQSGLILFAFPLLGSAIMMLLFDRNFGTSFF 307
>UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia
polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha
(Liverwort)
Length = 434
Score = 67.3 bits (157), Expect = 3e-10
Identities = 39/118 (33%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Frame = +2
Query: 11 RKIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXX 184
+ IGTLY EL PG+ I G+ Q+YN ++TAHA
Sbjct: 15 KDIGTLYLIFGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYNVLITAHAFLMIFFMV 74
Query: 185 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 358
N VP+++G+PD+AFPR+NNI F +VE G G+G TV
Sbjct: 75 MPAMIGGFGNWFVPILIGSPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGCGSGWTV 132
>UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3;
Theileria|Rep: Cytochrome c oxidase subunit 1 -
Theileria parva
Length = 481
Score = 67.3 bits (157), Expect = 3e-10
Identities = 43/170 (25%), Positives = 70/170 (41%)
Frame = +2
Query: 128 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 307
+IYN + T H N L P++LG D+ +PR+N
Sbjct: 60 EIYNLLFTLHGLIMVFFNIMTGLFGGIGNYLYPVLLGYCDVVYPRVNLYSLLFQPIGFVL 119
Query: 308 XXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXX 487
+E G+GTG T+YPPLS+++++ G +D IF L AGI+S
Sbjct: 120 VVSSIYLEIGSGTGWTLYPPLSTSLSNVG--IDFIIFGLLAAGIASTLSSVNFITTFTSV 177
Query: 488 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFD 637
D++ ++ +T+F ++ DR+ NT FF+
Sbjct: 178 KTIGFVIDRISPAAWSIVLTSFLLLLSLPVVTAVFLMVFLDRHYNTMFFE 227
>UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena
gracilis|Rep: Cytochrome oxidase subunit I - Euglena
gracilis
Length = 495
Score = 65.7 bits (153), Expect = 9e-10
Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 2/171 (1%)
Frame = +2
Query: 131 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 310
IYN +T H N L+P+++G +++ PR+N I F
Sbjct: 63 IYNNWITIHGLIMLFVFIMPVGIGFYGNYLIPMLIGTSELSMPRMNGISFWMLIVGVVIF 122
Query: 311 XXXXI-VENGAGTG*TVYPPLSSNIAHR-GRSVDLAIFSLHLAGISSXXXXXXXXXXXXX 484
+ + +G T+YPPLS+ A G ++DL++ +H+ GISS
Sbjct: 123 VISNVLMSKPISSGWTLYPPLSTRDADNIGVNIDLSLLVVHVLGISSTIGSVNYITTNKY 182
Query: 485 XXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFD 637
+F + ++ ++ +T+ AIT LL DRN+N++ +D
Sbjct: 183 NRHVGLTFMNINIYNFSIIVTSILLIGSLPILGVAITGLLLDRNINSTIYD 233
>UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1;
Dicyema misakiense|Rep: Cytochrome c oxidase subunit I -
Dicyema misakiense
Length = 473
Score = 64.1 bits (149), Expect = 3e-09
Identities = 52/182 (28%), Positives = 75/182 (41%)
Frame = +2
Query: 92 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 271
+L P L D +YN VT H N L+P PD+ FPR+N
Sbjct: 37 QLAFPSILTSD--VYNAFVTLHGLVMVFFAAMPTAIGFFANLLIPYHCNLPDLLFPRMNA 94
Query: 272 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 451
+ F ++ + A G T YPPLSS SV+ ++FSLHLAGI+S
Sbjct: 95 LSFWLMPFSLSL-----LLFSMASAGWTFYPPLSS----LSPSVEFSVFSLHLAGIASLI 145
Query: 452 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSF 631
+ L LF ++ + + A IT++LTD++L T F
Sbjct: 146 SSCNFLVTMLATRTSL--WYSLSLFCWSIVLVSLLLVLSLPVLAVGITLILTDKHLGTCF 203
Query: 632 FD 637
+D
Sbjct: 204 YD 205
>UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3;
Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces
maris DSM 8797
Length = 754
Score = 63.3 bits (147), Expect = 5e-09
Identities = 50/210 (23%), Positives = 76/210 (36%)
Frame = +2
Query: 11 RKIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXX 190
++IG +Y +L P + +++N + T H
Sbjct: 33 KRIGIMYILTAVFYLAVGGFEALLMRIQLAFPNNTFLSPEMFNQLFTMHGTTMVFLVGMP 92
Query: 191 XXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPL 370
N VPL++GA D+AFPR+N+ F + + G Y PL
Sbjct: 93 VLTGFA-NYFVPLMIGARDVAFPRLNSFGFWMFFFGAALLHFSFLTGSAPNAGWFSYVPL 151
Query: 371 SSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 550
SS + VD I L + GI S S ++PLFV + + A
Sbjct: 152 SSKAYSSLQGVDYWIIGLLIMGIGSVSGAINIFATIINLRAPGMSLQRVPLFVWMMLMQA 211
Query: 551 FXXXXXXXXXAGAITILLTDRNLNTSFFDP 640
A+ +LL DR L ++FFDP
Sbjct: 212 ILIILALPALNSALAMLLIDRWLGSAFFDP 241
>UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia
lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 457
Score = 62.9 bits (146), Expect = 6e-09
Identities = 39/99 (39%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Frame = +2
Query: 92 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 265
EL N GS L G+ Q +N ++TAHA N L+PL+LGA D+AF R+
Sbjct: 44 ELANTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGGFGNYLMPLMLGASDMAFARL 103
Query: 266 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 382
NNI F +VE GAGTG TV SS +
Sbjct: 104 NNISFWLLVPSLILILTSALVEAGAGTGWTVKKICSSKM 142
>UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Schistosoma mansoni (Blood fluke)
Length = 609
Score = 60.9 bits (141), Expect = 3e-08
Identities = 55/211 (26%), Positives = 76/211 (36%)
Frame = +2
Query: 11 RKIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXX 190
++IG LY L +P + +YN +VT H
Sbjct: 111 KRIGLLYFVFGLWGGFIGLGLSLLIRLNLCDPYYNLVSVDVYNYLVTNHGVAMIFFFLMP 170
Query: 191 XXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPL 370
N +P+ L D+ PR+N++ G G G T+YPPL
Sbjct: 171 ILIGGFGNYFLPIFLCLDDLLLPRLNSLSLWLMVPSIFYMELSLYY--GCGIGWTLYPPL 228
Query: 371 SSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 550
S G VD +FSLHLAG+SS S + V A T+
Sbjct: 229 SI-WEGSGFGVDYLMFSLHLAGVSSLIGSVNFISTIFSRLSFNCS-----IIVWAYLFTS 282
Query: 551 FXXXXXXXXXAGAITILLTDRNLNTSFFDPA 643
A IT+LL DRN T+FF+P+
Sbjct: 283 VLLLLSLPVLASGITMLLFDRNFGTAFFEPS 313
>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
subunit I - Myxococcus xanthus (strain DK 1622)
Length = 556
Score = 60.1 bits (139), Expect = 4e-08
Identities = 51/185 (27%), Positives = 71/185 (38%), Gaps = 1/185 (0%)
Frame = +2
Query: 92 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 271
EL PG I D YN T H N ++PL+LGA D+AFPR+N
Sbjct: 70 ELLTPGPTIMDAMTYNRTFTLHGLVMIFLFMIPAIPAVFGNFMLPLMLGAKDVAFPRLNL 129
Query: 272 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 451
+ ++ G TG T Y P S AH +V +F + G SS
Sbjct: 130 LSL-YIYLAGAVLALWGMLNGGLDTGWTFYTPYS---AHTTTTVAPVLFGAFIIGFSSIV 185
Query: 452 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL-NTS 628
++ ++PLFV A+ T+ G + +L+T NL
Sbjct: 186 TGINFIVTCHTMRAPGITWFKMPLFVWAIYATS-CIQVLATPVIGLLLVLVTVENLFGFG 244
Query: 629 FFDPA 643
FDPA
Sbjct: 245 MFDPA 249
>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
Bacteria|Rep: Cytochrome c oxidase subunit I type -
Anaeromyxobacter sp. Fw109-5
Length = 555
Score = 59.3 bits (137), Expect = 8e-08
Identities = 47/184 (25%), Positives = 70/184 (38%)
Frame = +2
Query: 92 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 271
EL PG I D YN + T H N L+P+++GA D+AFP++N
Sbjct: 63 ELLTPGPTIMDAMTYNRMFTLHGVVMIFLFMIPAIPSGFGNFLLPIMIGAKDVAFPKLNL 122
Query: 272 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 451
+ F +V+ GA TG T Y P S+ + V L F L G SS
Sbjct: 123 LSF-YVYLAGAVVALFGMVQGGADTGWTFYTPYSTTTITKVVPVLLGAFIL---GFSSIL 178
Query: 452 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSF 631
+ +LPLFV ++ T+ ++ ++ +
Sbjct: 179 TGLNFIVTTHTMRAPGMGWTRLPLFVWSIYATSVIQILATPVLGMSLLLVAVEHAFGWGI 238
Query: 632 FDPA 643
FDPA
Sbjct: 239 FDPA 242
>UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1;
Blastopirellula marina DSM 3645|Rep: Cytochrome c
oxidase subunit I - Blastopirellula marina DSM 3645
Length = 595
Score = 59.3 bits (137), Expect = 8e-08
Identities = 45/175 (25%), Positives = 69/175 (39%), Gaps = 4/175 (2%)
Frame = +2
Query: 128 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 307
+ Y +VT HA N L+PL++GA D+AFP +N + +
Sbjct: 86 EFYTVLVTMHATVMIFLVIIPILAGAFGNFLIPLMIGADDMAFPTLNMLSYWFMWPAFFF 145
Query: 308 XXXXXIVE-NGAGTG*TVYPPLS---SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXX 475
+ +GA G T YPPLS ++ G + L + + G+SS
Sbjct: 146 FGGAFFCDGHGAAAGWTSYPPLSDMTTSAPSSGAAQTLWLLGVTTVGVSSMLGSVNYMTT 205
Query: 476 XXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP 640
+ +LPL + A+ ITA A ++L DR + T FF P
Sbjct: 206 IIQMRAPGMTMFRLPLTIWAMFITALLQAFALPVLTAAGFMMLADRLIGTGFFLP 260
>UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1;
Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase
subunit I - Myrmarachne sp. G FSC-2006
Length = 129
Score = 59.3 bits (137), Expect = 8e-08
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +2
Query: 323 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 445
+VE G G G TVYPPL+S + H G SVD AIFSLHLAG SS
Sbjct: 12 MVEMGVGAGWTVYPPLASVVGHGGSSVDFAIFSLHLAGASS 52
>UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;
Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III
- Aeropyrum pernix
Length = 815
Score = 58.8 bits (136), Expect = 1e-07
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 2/146 (1%)
Frame = +2
Query: 212 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYPPLSSNIAH 388
N +VPL +GA D+AFPR+N + + E+GA G T+Y PL++ I
Sbjct: 88 NYIVPLQIGARDLAFPRLNALSYWLYLLSGLVLLASFFTESGAPNVGWTLYAPLTARIYT 147
Query: 389 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 568
G +DLA ++ L +S + ++P+F ++ T
Sbjct: 148 PGIGLDLAALAIFLFSLSVTLGTINFLVTIAAMRAPGIGWFKMPMFTWSILFTVILMLWA 207
Query: 569 XXXXAGAITILLTDRNLNTSFF-DPA 643
+LL DRNL T FF +PA
Sbjct: 208 FPPLMVGGALLLLDRNLGTEFFLNPA 233
>UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16;
cellular organisms|Rep: Cytochrome C oxidase subunit I -
Rhizobium loti (Mesorhizobium loti)
Length = 623
Score = 58.4 bits (135), Expect = 1e-07
Identities = 49/185 (26%), Positives = 71/185 (38%), Gaps = 1/185 (0%)
Frame = +2
Query: 92 ELGNPGS-LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 268
+L P + IG D+ YN I T H LVPL++G IAFPR+N
Sbjct: 57 QLAQPEARFIGPDR-YNQIFTMHGSNMMFLFAVPVMQAMAIY-LVPLMVGTRHIAFPRLN 114
Query: 269 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSX 448
+ V+ G G Y PLS G+ D+ + +S+
Sbjct: 115 AFSYWMYLAGGLLLWIAFAVDTGPDIGWFAYVPLSGPQYAAGKRADIWAQMITFTEVSAL 174
Query: 449 XXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTS 628
S D++PLFV ++ +T+F A T L+ DR + T
Sbjct: 175 AIAVEIVVTVFKQRAPGMSLDRIPLFVWSMLVTSFLVILAMPAIMIASTSLILDRLVGTH 234
Query: 629 FFDPA 643
FF+PA
Sbjct: 235 FFNPA 239
>UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45;
Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus
subtilis
Length = 649
Score = 58.4 bits (135), Expect = 1e-07
Identities = 47/208 (22%), Positives = 70/208 (33%)
Frame = +2
Query: 11 RKIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXX 190
+K+G +Y A+L P + D YN I T H
Sbjct: 54 KKLGIMYIISAVIMLFRGGVDGLMMRAQLALPNNSFLDSNHYNEIFTTHGTIMIIFMAMP 113
Query: 191 XXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPL 370
N +VPL +GA D+AFP +NN+ F ++ G T Y PL
Sbjct: 114 FLIGLI-NVVVPLQIGARDVAFPYLNNLSFWTFFVGAMLFNISFVIGGSPNAGWTSYMPL 172
Query: 371 SSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 550
+SN G + + L +AGI + + ++P+F IT
Sbjct: 173 ASNDMSPGPGENYYLLGLQIAGIGTLMTGINFMVTILKMRTKGMTLMRMPMFTWTTLITM 232
Query: 551 FXXXXXXXXXAGAITILLTDRNLNTSFF 634
A+ +L DR FF
Sbjct: 233 VIIVFAFPVLTVALALLSFDRLFGAHFF 260
>UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16;
Bacteria|Rep: Cytochrome c oxidase subunit I -
Synechococcus sp. (strain CC9311)
Length = 564
Score = 57.6 bits (133), Expect = 2e-07
Identities = 48/186 (25%), Positives = 70/186 (37%), Gaps = 3/186 (1%)
Frame = +2
Query: 92 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 271
EL P + + D +YN + T H N L+P ++GAPD+AFP++N
Sbjct: 64 ELITPPADLVDPSVYNGLYTMHGTVMLFLFLFPILNGFN-NLLIPTMIGAPDMAFPKLNA 122
Query: 272 IRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLS--SNIAHRGRSVDLAIFSLHLAGIS 442
F G A +G YPP+S + + H L I ++ L+GIS
Sbjct: 123 AAFWLVPVFSIVLMGSFFAPGGPASSGWWSYPPMSLQNPLGHFINGEFLWILAVALSGIS 182
Query: 443 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 622
S F ++P+FV G +LL D +
Sbjct: 183 SIMGAINFVTTIIRMRAPGMGFFRMPVFVWTAWAAQTIQLIGLPALTGGAVMLLFDLSFG 242
Query: 623 TSFFDP 640
TSFF P
Sbjct: 243 TSFFRP 248
>UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1;
Kluyveromyces thermotolerans|Rep: Putative DNA
endonuclease - Kluyveromyces thermotolerans (Yeast)
Length = 542
Score = 57.2 bits (132), Expect = 3e-07
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Frame = +2
Query: 92 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 265
EL PG+ L G+ Q++N +V HA N L+PL++GA D++F R+
Sbjct: 39 ELAAPGNQYLGGNHQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGASDMSFARL 98
Query: 266 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 358
NNI F +VE+GAGTG TV
Sbjct: 99 NNISFWLLPPALVCLVTSTLVESGAGTGWTV 129
>UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93;
Actinobacteria (class)|Rep: Cytochrome c oxidase subunit
1 - Corynebacterium glutamicum (Brevibacterium flavum)
Length = 584
Score = 56.8 bits (131), Expect = 4e-07
Identities = 46/186 (24%), Positives = 68/186 (36%), Gaps = 1/186 (0%)
Frame = +2
Query: 89 AELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 268
AEL PG ++ +N + T H N ++PL +GAPD+AFPR+N
Sbjct: 65 AELFTPGLQFLSNEQFNQLFTMHGTVMLLLYGTPIVWGFA-NYVLPLQIGAPDVAFPRLN 123
Query: 269 NIRFXXXXXXXXXXXXXXIVENGAGT-G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 445
F + GA G T+Y PLS I G D+ I + GI S
Sbjct: 124 AFGFWITTVGGVAMLTGFLTPGGAADFGWTMYSPLSDAIHSPGLGSDMWIVGVGATGIGS 183
Query: 446 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 625
+ ++P+F + + + A +L DR L
Sbjct: 184 VASAINMLTTILCLRAPGMTMFRMPIFTWNIFVVSVLALLIFPLLLAAALGVLYDRKLGG 243
Query: 626 SFFDPA 643
+DPA
Sbjct: 244 HLYDPA 249
>UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2;
Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp.
RS-1
Length = 641
Score = 56.4 bits (130), Expect = 5e-07
Identities = 48/210 (22%), Positives = 71/210 (33%)
Frame = +2
Query: 11 RKIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXX 190
++IG +Y +LG P + +YN + T H
Sbjct: 32 KRIGIMYLVSAFVFFLIGGIEALLMRIQLGVPDNTFLTPDVYNQMFTMHGTTMIFLGLMP 91
Query: 191 XXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPL 370
N +VPL++GA D+AFPR+N + V G Y PL
Sbjct: 92 LNVGLG-NYMVPLMIGARDMAFPRLNALSIWLFIFGGLMLYVSFFVGGAPNVGWFAYAPL 150
Query: 371 SSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 550
+ VD I + L G++S + +++PLFV + A
Sbjct: 151 TQKQFAPTAGVDYWIVGIGLTGVASIAGALNFIVTILNMRAPGMTLNRMPLFVWMQLVVA 210
Query: 551 FXXXXXXXXXAGAITILLTDRNLNTSFFDP 640
F A LL DR+ T FF P
Sbjct: 211 FILIFAFPVLTVATIQLLFDRHFGTRFFLP 240
>UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1);
n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) -
Synechocystis sp. (strain PCC 6803)
Length = 551
Score = 56.4 bits (130), Expect = 5e-07
Identities = 50/183 (27%), Positives = 67/183 (36%)
Frame = +2
Query: 92 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 271
EL P ++YN ++T H N L+PL++G D+AFPR+N
Sbjct: 55 ELATPSPDFVQPEMYNQLMTLHGTIMIFLWIVPAGAAFA-NYLIPLMVGTEDMAFPRLNA 113
Query: 272 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 451
+ F V G T YPPLS G +L I SL L G SS
Sbjct: 114 VAFWLTPPGGILLISSFFV-GAPQAGWTSYPPLSLLSGKWGE--ELWILSLLLVGTSSIL 170
Query: 452 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSF 631
+PLF A+ T+ A A+ +L D TSF
Sbjct: 171 GAINFVTTILKMRIKDMDLHSMPLFCWAMLATSSLILLSTPVLASALILLSFDLIAGTSF 230
Query: 632 FDP 640
F+P
Sbjct: 231 FNP 233
>UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4;
Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1
- Halobacterium salinarium (Halobacterium halobium)
Length = 593
Score = 56.0 bits (129), Expect = 7e-07
Identities = 49/213 (23%), Positives = 76/213 (35%), Gaps = 2/213 (0%)
Frame = +2
Query: 11 RKIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXX 190
+ IG LY EL + +YN ++T+H
Sbjct: 69 KDIGILYGVYGTIAFAWGGVSVLLMRTELATSSETLISPSLYNGLLTSHGITMLFLFGTP 128
Query: 191 XXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVEN--GAGTG*TVYP 364
N +PL++ A D+AFPRIN I F ++ A T T+Y
Sbjct: 129 MIAAFG-NYFIPLLIDADDMAFPRINAIAFWLLPPGAILIWSGFLIPGIATAQTSWTMYT 187
Query: 365 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 544
PLS ++ +VD+ + LHL G+S+ + L +F +
Sbjct: 188 PLSLQMS--SPAVDMMMLGLHLTGVSATMGAINFIATIFTERGEDVGWPDLDIFSWTMLT 245
Query: 545 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA 643
+ A+ +LL DRN T+FF A
Sbjct: 246 QSGLILFAFPLFGSALIMLLLDRNFGTTFFTVA 278
>UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC
1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus
thermophilus|Rep: Cytochrome c oxidase polypeptide I+III
(EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 791
Score = 54.8 bits (126), Expect = 2e-06
Identities = 48/212 (22%), Positives = 74/212 (34%), Gaps = 1/212 (0%)
Frame = +2
Query: 11 RKIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXX 190
+KIG +Y +L P + + YN I+T H
Sbjct: 25 KKIGLMYTATAFFAFALAGVFSLLIRTQLAVPNNQFLTGEQYNQILTLHGATMLFFFIIQ 84
Query: 191 XXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYPP 367
N +VPL+LGA D+A PR+N + GA G T Y P
Sbjct: 85 AGLTGFGNFVVPLMLGARDVALPRVNAFSYWAFLGAIVLALMSYFFPGGAPSVGWTFYYP 144
Query: 368 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 547
S A VD + ++ L G SS S ++P++V +V
Sbjct: 145 FS---AQSESGVDFYLAAILLLGFSSLLGNANFVATIYNLRAQGMSLWKMPIYVWSVFAA 201
Query: 548 AFXXXXXXXXXAGAITILLTDRNLNTSFFDPA 643
+ A ++L +R + S+F+PA
Sbjct: 202 SVLNLFSLAGLTAATLLVLLERKIGLSWFNPA 233
>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
1 - Beggiatoa sp. PS
Length = 525
Score = 54.4 bits (125), Expect = 2e-06
Identities = 52/213 (24%), Positives = 77/213 (36%), Gaps = 2/213 (0%)
Frame = +2
Query: 11 RKIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDD-QIYNTIVTAHAXXXXXXXXX 187
+++G LY EL G I DD +YNT + H
Sbjct: 15 KRVGILYLIGSIAAFAVAGIMAMLIRLELSQIGPTITDDPSVYNTWLYFHGAAMILAFQI 74
Query: 188 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 367
N +PL++GA D+AFPR+N + + + T YPP
Sbjct: 75 PALTGFFANYFIPLMIGAKDVAFPRVNALSVWLFYAGVLVALTTFFIPDPPDIMWTGYPP 134
Query: 368 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 547
S I H + FS+ L G +S +++L +FV A +
Sbjct: 135 YSI-ITHGNTA--FYTFSVLLLGFASILGGVNFLTTVTFMRAPGIGWNKLNIFVWAT-LA 190
Query: 548 AFXXXXXXXXXAG-AITILLTDRNLNTSFFDPA 643
AF G A+T+L D+ + T FFD A
Sbjct: 191 AFVLQLIFVPVLGTAVTMLTFDKYIGTHFFDAA 223
>UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4;
cellular organisms|Rep: Cytochrome C oxidase subunit I
/III - Pyrobaculum aerophilum
Length = 800
Score = 52.8 bits (121), Expect = 7e-06
Identities = 39/144 (27%), Positives = 59/144 (40%), Gaps = 1/144 (0%)
Frame = +2
Query: 212 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG*TVYPPLSSNIAH 388
N LVP ++GAPD+ +PRIN + F + ++G G T+YPPLS+
Sbjct: 86 NILVPKLIGAPDMYWPRINALSFWMQVPATVFMWSSLLFWQHGDSIGWTLYPPLST--IS 143
Query: 389 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 568
+ VDL + + +AG SS + LF +V +
Sbjct: 144 KSIGVDLILLGIIIAGFSSTLTGINFILTITRLRRPDIKMLDMSLFAWSVLAASMLMVTA 203
Query: 569 XXXXAGAITILLTDRNLNTSFFDP 640
A +LL +R+L FF P
Sbjct: 204 LPPLAAGAIMLLLERHLGMHFFTP 227
>UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase
aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase
polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605
subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis
Length = 622
Score = 51.2 bits (117), Expect = 2e-05
Identities = 41/210 (19%), Positives = 72/210 (34%)
Frame = +2
Query: 11 RKIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXX 190
+KI LY +L P + Q YN ++T H
Sbjct: 25 KKIAILYLVAGGFFFLVGGIEAMFIRIQLAKPENAFLSAQAYNEVMTMHGTTMIFLAAMP 84
Query: 191 XXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPL 370
N +VPL +GA D++FP +N + F + G T Y L
Sbjct: 85 LLFALM-NAVVPLQIGARDVSFPFLNALGFWLFFFGHIFLNLSWFLGGAPDAGWTSYASL 143
Query: 371 SSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 550
S + +G +D + L ++G+ + ++ +LPLF + +
Sbjct: 144 S--LHSKGHGIDFFVLGLQISGLGTLIAGINFLATIINMRAPGMTYMRLPLFTWTTFVAS 201
Query: 551 FXXXXXXXXXAGAITILLTDRNLNTSFFDP 640
+ +++ DR T+FF+P
Sbjct: 202 ALILFAFPPLTVGLALMMLDRLFGTNFFNP 231
>UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase
polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=20; cellular organisms|Rep: Alternative
Cytochrome c oxidase polypeptide I (Cytochrome BB3
subunit 1) (Oxidase BB(3) subunit 1) - Microscilla
marina ATCC 23134
Length = 635
Score = 50.8 bits (116), Expect = 3e-05
Identities = 44/175 (25%), Positives = 68/175 (38%), Gaps = 4/175 (2%)
Frame = +2
Query: 122 DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXX 301
+ + Y +VT H N L+PL +GA D+A +N + +
Sbjct: 98 EPEFYLALVTMHGTIMVFFVLTAGLSGTFSNFLIPLQIGARDMASGFMNMLSYWFFFGSS 157
Query: 302 XXXXXXXIVENGAGTG*-TVYPPLSS---NIAHRGRSVDLAIFSLHLAGISSXXXXXXXX 469
+E G +G +YPPLS+ ++ G + + + S+ L IS
Sbjct: 158 VIMFASIFLETGPASGSWVIYPPLSALPQAMSGSGAGMTMWLISMALFIISVLLGGINYI 217
Query: 470 XXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFF 634
SF +LPL + A ITA A +L+ DR+L TSFF
Sbjct: 218 TTVINLRVKGMSFTRLPLTIWAFFITAIIGLLSFPVLFSAALLLIFDRSLGTSFF 272
>UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I;
n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase,
subunit I - Chromobacterium violaceum
Length = 680
Score = 49.2 bits (112), Expect = 8e-05
Identities = 37/141 (26%), Positives = 54/141 (38%)
Frame = +2
Query: 212 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 391
N +VPL +GA D+AFP +N++ F V N A TG YPPL+
Sbjct: 125 NIVVPLQIGARDVAFPFLNSLSFWLLVSAVILVNLSLGVGNFARTGWVAYPPLAELGFSP 184
Query: 392 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 571
VD I++L ++GI + +P+F
Sbjct: 185 DVGVDYYIWALQISGIGTTLTAINFLVTVIKMRAPGMKLMDMPIFTWTCTWANVLIATSF 244
Query: 572 XXXAGAITILLTDRNLNTSFF 634
GA+ +L DR L+ FF
Sbjct: 245 PILTGALAMLALDRYLDFHFF 265
>UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1;
Celatoblatta vulgaris|Rep: Cytochrome oxidase subunit I
- Celatoblatta vulgaris
Length = 134
Score = 47.2 bits (107), Expect = 3e-04
Identities = 20/35 (57%), Positives = 23/35 (65%)
Frame = +1
Query: 529 MSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF 633
M C +YS +TC WSYYN IN SKLKYI+F
Sbjct: 84 MICSNYSFTIIIVSTCSCWSYYNTINWSKLKYILF 118
>UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol
oxidase, subunit 1; n=2; Thermoprotei|Rep:
Heme/copper-type cytochrome/quinol oxidase, subunit 1 -
Cenarchaeum symbiosum
Length = 508
Score = 46.4 bits (105), Expect = 6e-04
Identities = 48/186 (25%), Positives = 71/186 (38%), Gaps = 1/186 (0%)
Frame = +2
Query: 89 AELGNPGS-LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 265
AEL PG+ I D +N + T H N VP+++ D+A+P++
Sbjct: 47 AELFFPGTQFIADSMTFNRMFTVHGTTLIFLFILPFASAVG-NYFVPIMVRYKDMAYPKL 105
Query: 266 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 445
N I F + T PP S I+ G + D+ IF L + GISS
Sbjct: 106 NAIAFWMIPPAGALVWLGFADFSWYAT-----PPYSV-ISAPGPAADMWIFGLKILGISS 159
Query: 446 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 625
S Q+PL + ++ A A+ +LLTDR +
Sbjct: 160 ILGSINFIVTILKCKHPDMSLGQVPLLAWSYLSSSLIVLVALPTFAAALLMLLTDRLGVS 219
Query: 626 SFFDPA 643
FF+PA
Sbjct: 220 GFFNPA 225
>UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Alternative cytochrome c oxidase
polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c
oxidase polypeptide I) (Cytochrome BB3 subunit 1)
(Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum
Length = 591
Score = 45.6 bits (103), Expect = 0.001
Identities = 48/188 (25%), Positives = 69/188 (36%), Gaps = 5/188 (2%)
Frame = +2
Query: 92 ELGNPGSL-IGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 268
+LG PG+ D Y +T H N L+PL++GA D+ FP +N
Sbjct: 66 QLGFPGTFSFIDANQYLQFITMHGMIMVIYLLTALFLGGFGNYLIPLMVGARDMVFPYVN 125
Query: 269 NIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPP--LSSNIAHRGRSVDLAIFSLHLAGI 439
+ + V G G G T+YPP + S + + L + SL L I
Sbjct: 126 MLSYWVYLLAVLVLASAFFVPGGPTGAGWTLYPPQAILSGTPGQDWGIVLMLSSLILFII 185
Query: 440 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV-GITAFXXXXXXXXXAGAITILLTDRN 616
+ +LPL V + T G++ +LL DR
Sbjct: 186 GFTMGGLNYVVTVLQARTRGMTLMRLPLTVWGIFTATVMALLAFPALFVGSVMLLL-DRL 244
Query: 617 LNTSFFDP 640
L TSFF P
Sbjct: 245 LGTSFFMP 252
>UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-)
(Ubiquinol oxidase polypeptide I) (Cytochrome o subunit
1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep:
Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol
oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase
BO(3) subunit 1) - Pseudomonas putida
Length = 672
Score = 45.2 bits (102), Expect = 0.001
Identities = 35/141 (24%), Positives = 51/141 (36%)
Frame = +2
Query: 212 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 391
N VPL +GA D+AFP +N++ F V A TG YPPL+
Sbjct: 124 NLAVPLQIGARDVAFPFLNSLSFYLLLAGVLLVNISLGVGEFAKTGWVAYPPLAGIQYSP 183
Query: 392 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 571
G VD I++L L+G+ + +P+F
Sbjct: 184 GVGVDYYIWALQLSGLGTTLTGVNFLVTVMKMRAPGMKLMDMPIFTWTCTWANVLIVASF 243
Query: 572 XXXAGAITILLTDRNLNTSFF 634
A+ +L DR L+ F
Sbjct: 244 PILTAALALLTVDRYLDFHIF 264
>UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30;
Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia
cenocepacia MC0-3
Length = 1004
Score = 44.0 bits (99), Expect = 0.003
Identities = 42/184 (22%), Positives = 65/184 (35%)
Frame = +2
Query: 92 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 271
+L P + + Y+++ T H N L PL+LG+ D+AFPR+
Sbjct: 77 QLARPNATVLTPAQYDSLFTMHGVTMIFLYALPVLSGFA-NYLWPLMLGSRDMAFPRLTA 135
Query: 272 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 451
+ + G Y PL+S G ++D+ + L GIS+
Sbjct: 136 FSYWSFLFAGLFLYASFPLGAVPDGGWFNYVPLTSLDYSAGANIDIYGLGMILLGISTTG 195
Query: 452 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSF 631
S D+LP+ V + + A +L DRN T F
Sbjct: 196 GAANFVVTLLRMRAHGMSIDRLPIIVWGTLTASVSNLVAVPSVSLAFLLLWLDRNAGTHF 255
Query: 632 FDPA 643
FD A
Sbjct: 256 FDVA 259
>UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1;
Pachymerium ferrugineum|Rep: Cytochrome oxidase subunit
I - Pachymerium ferrugineum
Length = 219
Score = 44.0 bits (99), Expect = 0.003
Identities = 34/123 (27%), Positives = 41/123 (33%)
Frame = +1
Query: 256 PTNK*YKILTPTPLPYIINFKKNCRKWCRNRMNSLPPTFI*YRT*RKIRRSCYFFTTFSX 435
P NK +KIL TPL Y N C K C + +NSLP Y T R +F T
Sbjct: 79 PPNKQFKILIITPLTYTTNSIYGCSKRCSHSVNSLPAPCCKYLTLGPFRSYNHFCPTSCS 138
Query: 436 XXXXXXXXXXXXXXXXXTXXXXXXXXXXXXCMSCRDYSXXXXXXTTCFSWSYYNIINRSK 615
CM +YS + S+YNI K
Sbjct: 139 SVFNSSLNQLYYNNHQYARYSNNPWTNPSVCMKSNNYSCTSTSFSPSIGSSHYNITYWPK 198
Query: 616 LKY 624
KY
Sbjct: 199 PKY 201
>UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3;
Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas
eutropha (strain C71)
Length = 703
Score = 43.6 bits (98), Expect = 0.004
Identities = 37/141 (26%), Positives = 51/141 (36%)
Frame = +2
Query: 212 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 391
N +VPL +GA D+AFP +N+I +V + G YPP + + +
Sbjct: 144 NYVVPLQIGARDVAFPILNSISLWLTAAGAALVMISLVVGAFSTGGWFGYPPYTETLYNP 203
Query: 392 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 571
G VD I+SL LA + S +PLF TA
Sbjct: 204 GIGVDYWIWSLTLASLGSTLTGINIAVTIYKKRAPGMKLYYMPLFTWTALCTAIMMIFAM 263
Query: 572 XXXAGAITILLTDRNLNTSFF 634
L DR L+ FF
Sbjct: 264 PPLTVVTLQLALDRYLDFHFF 284
>UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1;
Planctomyces maris DSM 8797|Rep: Cytochrome c oxidase
subunit I - Planctomyces maris DSM 8797
Length = 606
Score = 43.6 bits (98), Expect = 0.004
Identities = 37/175 (21%), Positives = 59/175 (33%), Gaps = 3/175 (1%)
Frame = +2
Query: 128 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 307
+ Y + T HA N L+PL++GA D+AFP++N + +
Sbjct: 90 EFYTMLFTMHATVMIFLVIIPILAGMFGNFLIPLMIGADDMAFPKLNMLSYWFMWPAIAC 149
Query: 308 XXXXXIVENGAGTG*TVYP---PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXX 478
G G T YP L+ G + + + G SS
Sbjct: 150 FGMSFKYAGGPAAGWTSYPVLADLAQAAPGSGTAQTYWLLGVTFVGFSSMMGSINYMTTI 209
Query: 479 XXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA 643
+F +LP+ + + ITA + + DR T FF P+
Sbjct: 210 INMRAPGMTFFRLPMTIWGLFITAILQAFALPVLTAGGFMQVADRLFGTCFFYPS 264
>UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter
shibae DFL 12|Rep: Cytochrome-c oxidase -
Dinoroseobacter shibae DFL 12
Length = 853
Score = 43.2 bits (97), Expect = 0.005
Identities = 32/140 (22%), Positives = 53/140 (37%)
Frame = +2
Query: 218 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 397
L+PL++GA D+ FPR+ + + + G +Y PLS++ G
Sbjct: 124 LIPLMIGARDLVFPRLGAFGYYCYLFGGIIVLSSFLFDAAPDGGWFMYVPLSTSAYTEGL 183
Query: 398 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 577
S D + + LA I+S S ++P+ + + TAF
Sbjct: 184 SADFWLIGITLAEIASVTAAVEIIAAILCSRAPGMSLTKMPILMWYLLATAFMIAIAFPP 243
Query: 578 XAGAITILLTDRNLNTSFFD 637
+L +R L FFD
Sbjct: 244 LIIGSILLEAERLLGLPFFD 263
>UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I;
n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O
ubiquinol oxidase subunit I - Carsonella ruddii (strain
PV)
Length = 606
Score = 42.3 bits (95), Expect = 0.010
Identities = 24/78 (30%), Positives = 37/78 (47%)
Frame = +2
Query: 212 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 391
N ++PL +G+ D+AFP +N + F I+ A TG YPPLS
Sbjct: 119 NIIIPLQIGSKDVAFPSLNLLSFWLTFFSVLLINISLIIGEFAKTGWLGYPPLSEKTFSP 178
Query: 392 GRSVDLAIFSLHLAGISS 445
VD +S+ ++GI +
Sbjct: 179 WVGVDYWNWSIQISGIGT 196
>UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2;
Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I -
Roseovarius nubinhibens ISM
Length = 818
Score = 41.9 bits (94), Expect = 0.013
Identities = 39/185 (21%), Positives = 62/185 (33%)
Frame = +2
Query: 89 AELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 268
A+L P S + YN + T H L+P +LG+ D+AFPR+
Sbjct: 56 AQLATPRSAFLGPEHYNQVFTMHGTIMMFLFAIPVFEGFAVY-LLPKLLGSRDLAFPRLT 114
Query: 269 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSX 448
F + +G +YPPLSS + G + D + + IS+
Sbjct: 115 AYGFWCYVFGGSMMIFSLLWGIAPDSGWFMYPPLSSTLGAPGINSDFWLIGITFVEISAI 174
Query: 449 XXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTS 628
S ++P+F +TA +L +R +
Sbjct: 175 AAAVEITVTVLRYRAPGMSLSKMPIFAWYALVTAVMILTGFPPLILGSILLELERAFDMP 234
Query: 629 FFDPA 643
FF A
Sbjct: 235 FFQAA 239
>UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus
flagellatus KT|Rep: Cytochrome-c oxidase -
Methylobacillus flagellatus (strain KT / ATCC 51484 /
DSM 6875)
Length = 631
Score = 41.5 bits (93), Expect = 0.017
Identities = 32/142 (22%), Positives = 51/142 (35%)
Frame = +2
Query: 218 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 397
++PL+LG D+ FPR+N + ++ G YPPL+ G
Sbjct: 105 IIPLMLGTRDMTFPRLNAFGYYIYLIAGVMMYAALLLRIAPDAGWFSYPPLAGASFSPGL 164
Query: 398 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 577
+D + IS+ S +++P+FV AV + +F
Sbjct: 165 GLDFYTTVVTFMEISALVAAIELIATIFKCKVPGMSLNRMPIFVWAVLVMSFMIVFALPP 224
Query: 578 XAGAITILLTDRNLNTSFFDPA 643
A +L DR FF A
Sbjct: 225 LVIASLMLALDRMAGMHFFTAA 246
>UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17;
Bacteria|Rep: Cytochrome C oxidase subunit I -
Symbiobacterium thermophilum
Length = 628
Score = 40.3 bits (90), Expect = 0.039
Identities = 42/213 (19%), Positives = 71/213 (33%), Gaps = 4/213 (1%)
Frame = +2
Query: 11 RKIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXX 190
++IG +Y +L PG + + +N + T HA
Sbjct: 30 KRIGIMYGVTGFFFFLVGGLEAWIMRLQLARPGLEVVTARTFNALFTMHATTMIFLGVMP 89
Query: 191 XXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAG----TG*TV 358
N +PL++GA D+AFPR+N + ++ G G
Sbjct: 90 LLSAFM-NYFLPLMIGARDVAFPRLNAFSYWIYLFGALFINAGWLMGTAGGHVPDIGWFG 148
Query: 359 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 538
Y L+S G D L L GI + + ++P+FV
Sbjct: 149 YANLTSVQFTSGLGPDFWTLGLLLLGIGTLVSGFNFIVTILNMRAPGMTLMKMPVFVWTT 208
Query: 539 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFD 637
+T+ A+ +L+ DR +FF+
Sbjct: 209 LVTSAIIIFAFPSVTVALIMLMFDRTFAANFFE 241
>UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;
n=2; Thermoplasmatales|Rep: Cytochrome c oxidase
polypeptide I/III - Picrophilus torridus
Length = 841
Score = 40.3 bits (90), Expect = 0.039
Identities = 35/140 (25%), Positives = 52/140 (37%), Gaps = 1/140 (0%)
Frame = +2
Query: 218 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLSSNIAHRG 394
L+PL +G+ D+ +PR+N + + + G TG TVY PLSS
Sbjct: 111 LIPLAIGSRDMIYPRMNALGYWLFLFSGIMLWSGFFLPGGNLDTGWTVYEPLSSFKFTPY 170
Query: 395 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXX 574
D A ++ L GI + LPLFV AV A
Sbjct: 171 LGADTAAAAVVLRGIGTIIASTEILATIFKARAKGYRMMNLPLFVWAVFWVAAISWFVFP 230
Query: 575 XXAGAITILLTDRNLNTSFF 634
G +LL ++ S++
Sbjct: 231 EITGLFFLLLVGNLMHASYY 250
>UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3;
Halobacteriaceae|Rep: Cytochrome c oxidase subunit I -
Haloarcula marismortui (Halobacterium marismortui)
Length = 854
Score = 38.7 bits (86), Expect = 0.12
Identities = 31/143 (21%), Positives = 53/143 (37%), Gaps = 2/143 (1%)
Frame = +2
Query: 212 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS--SNIA 385
N LVPL +GA D+AFPR+N + + G T+Y PL+ + I
Sbjct: 89 NYLVPLQIGADDLAFPRLNALSYWLYLFSGILMGVSFFQGTTFAGGWTMYAPLNTPAYIP 148
Query: 386 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 565
G + +L + + +P+F ++ +T +
Sbjct: 149 GEGLGATSVVLALIMFTAAVTLGSVNFLTTMYRMRAEGLRMRDIPIFSLSINLTVWMMLF 208
Query: 566 XXXXXAGAITILLTDRNLNTSFF 634
A+ IL +D L T++F
Sbjct: 209 AFAALLAALMILASDHILGTTYF 231
>UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2;
Deinococcus|Rep: Cytochrome c oxidase, subunit I -
Deinococcus radiodurans
Length = 820
Score = 38.3 bits (85), Expect = 0.16
Identities = 41/210 (19%), Positives = 64/210 (30%)
Frame = +2
Query: 11 RKIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXX 190
+KIG LY +L P + YN ++T HA
Sbjct: 33 KKIGLLYIIVSILGFCLGGLLALAIRVQLALPEQTLLVGTTYNQVLTMHAAIMLFFFLIP 92
Query: 191 XXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPL 370
N +PL LG D+A PR+N G T Y PL
Sbjct: 93 LGLFGFGNYFLPLQLGVRDVALPRLNTFAVWLFIASLILVVLGLFNGGAPSVGWTFYYPL 152
Query: 371 SSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 550
+ + G SV + ++ L G+ S ++P+F ++ T+
Sbjct: 153 TMDGNQTGVSVFMV--AVILNGLGSLLGSANFAATIVNLRAPGMGLWKMPVFAWSIFATS 210
Query: 551 FXXXXXXXXXAGAITILLTDRNLNTSFFDP 640
A + + L S F+P
Sbjct: 211 ILQLLTLGGLTAAALLTYLEIKLGLSMFNP 240
>UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15;
Proteobacteria|Rep: Quinol oxidase subunit I -
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
Length = 825
Score = 37.9 bits (84), Expect = 0.21
Identities = 29/146 (19%), Positives = 53/146 (36%)
Frame = +2
Query: 89 AELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 268
A+L +P S + Y + T H L+P +LG+ D+A+PR++
Sbjct: 56 AQLASPRSAFVGAETYAQLFTMHGTIMMFLFAIPMFEGLTIY-LLPKMLGSRDLAYPRLS 114
Query: 269 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSX 448
F + +G +YPPL+S + G + D + + IS+
Sbjct: 115 AYGFWCYVLGGSMLIVALLAGIAPDSGWFMYPPLASTLGSPGINSDFWLLGITFVEISAI 174
Query: 449 XXXXXXXXXXXXXXXXXXSFDQLPLF 526
S D++P++
Sbjct: 175 AAAVEIVVTVLRFRAPGMSLDRMPIY 200
>UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48;
Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 -
Tetrahymena pyriformis
Length = 698
Score = 37.9 bits (84), Expect = 0.21
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +2
Query: 92 ELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 265
EL +P S GD Y +VTAH N L+P +G+ D+A+PR+
Sbjct: 88 ELAHPESPFFKGDSLRYLQVVTAHGLIMVFFVVVPILFGGFANFLIPYHVGSKDVAYPRL 147
Query: 266 NNIRF 280
N+I F
Sbjct: 148 NSIGF 152
>UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2;
Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria
bacterium (strain Ellin345)
Length = 595
Score = 37.1 bits (82), Expect = 0.36
Identities = 42/187 (22%), Positives = 69/187 (36%), Gaps = 5/187 (2%)
Frame = +2
Query: 98 GNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 277
G PG ++ + Y +++T H N +P+ +GA D+AFPR N +
Sbjct: 75 GAPGDVM-TPEYYLSLLTMHGTLMVFFVLTNAPFAAFGNYFLPIQIGAEDMAFPRFNMMS 133
Query: 278 FXXXXXXXXXXXXXXIVENGAG-TG*TVYPPLSS--NIAHRGRSVDLAIFSLHLA--GIS 442
F + +G +G T Y LS+ A G + ++ + +A I+
Sbjct: 134 FWTTFAAFCVLIAAFFIPDGPPISGWTAYATLSAVGGDAGPGMAYGQTLWGISIAIFCIA 193
Query: 443 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 622
S S ++P+ A IT+ A +L DR
Sbjct: 194 SLLGSLNFIATTLDLRTKGMSLMRMPICTWAWFITSCIALLAFAVLLPACILLCLDRVAG 253
Query: 623 TSFFDPA 643
TSFF P+
Sbjct: 254 TSFFIPS 260
>UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2;
Eutetramorium sp. BLF m1|Rep: Cytochrome c oxidase
subunit I - Eutetramorium sp. BLF m1
Length = 201
Score = 37.1 bits (82), Expect = 0.36
Identities = 27/78 (34%), Positives = 35/78 (44%)
Frame = +2
Query: 392 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 571
G L IFSL + S + D++ L ++ ITA
Sbjct: 124 GSXXXLXIFSLXIXXXSXIFSAXNFISXIINMRHTMLTMDKISLLSWSILITAVLLLLSL 183
Query: 572 XXXAGAITILLTDRNLNT 625
AGAIT+LLTDRN+NT
Sbjct: 184 PVLAGAITMLLTDRNMNT 201
>UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5;
Sulfolobaceae|Rep: Quinol oxidase subunit 1/3 -
Sulfolobus acidocaldarius
Length = 788
Score = 35.9 bits (79), Expect = 0.83
Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 1/145 (0%)
Frame = +2
Query: 212 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS-SNIAH 388
N LVP ++GA D+ +P+IN + F ++ G +Y PLS +
Sbjct: 80 NYLVPRMIGAHDLYWPKINALSFWMLVPAVILAAISPLL-GAVDLGWYMYAPLSVETTVN 138
Query: 389 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 568
G +L +L L+G+SS + ++PLFV TA
Sbjct: 139 YGLGTNLIQIALILSGLSS--TLTGVNFVMTITKMKKVPYLKMPLFVWGFFTTAILMIIA 196
Query: 569 XXXXAGAITILLTDRNLNTSFFDPA 643
+ +R T FFD A
Sbjct: 197 MPSLTAGLVFAYLERLWGTPFFDSA 221
>UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1;
Tetragona dorsalis ziegleri|Rep: Cytochrome c oxidase
subunit I - Tetragona dorsalis ziegleri
Length = 111
Score = 35.1 bits (77), Expect = 1.5
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +2
Query: 509 DQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFF 634
DQ+ LF ++ IT AG IT+LL+DRN N FF
Sbjct: 12 DQINLFSWSISITVNLSILSLPMLAGTITMLLSDRNFNKFFF 53
>UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5;
Proteobacteria|Rep: Cytochrome c oxidase, subunit I -
Mesorhizobium sp. (strain BNC1)
Length = 845
Score = 33.1 bits (72), Expect = 5.9
Identities = 42/212 (19%), Positives = 65/212 (30%), Gaps = 1/212 (0%)
Frame = +2
Query: 2 IGTRKIGTLYXXXXXXXXXXXXXXXXXXXAELGNP-GSLIGDDQIYNTIVTAHAXXXXXX 178
+ + IG LY +L P L+G D YN I T H
Sbjct: 37 VNNQVIGILYVGAAFLFFILAGILGLIMRTQLAVPENDLVGQD-FYNQIFTVHGTTMMFL 95
Query: 179 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 358
L+P +L A D+ FPR++ + G +
Sbjct: 96 FAVPVVEALGVM-LLPQMLAARDLPFPRLSAFAIWAYIVGGLVFFSTVFYDLAPKGGWFM 154
Query: 359 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 538
YPPL+ G + D + + IS+ S ++P+F A+
Sbjct: 155 YPPLTLKEYSPGDNADFWLLGIGFIEISAIAGAIEIIVGTLRTRPPGMSLTRMPIFAWAM 214
Query: 539 GITAFXXXXXXXXXAGAITILLTDRNLNTSFF 634
I A A +L +R+ FF
Sbjct: 215 LIFAAMIMIAFPAVILATMLLEIERSFGWPFF 246
>UniRef50_Q8II85 Cluster: Putative uncharacterized protein; n=2;
Plasmodium|Rep: Putative uncharacterized protein -
Plasmodium falciparum (isolate 3D7)
Length = 1420
Score = 32.7 bits (71), Expect = 7.7
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -2
Query: 612 RSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDILFN 490
+++NN +I S NNN N++ T TN + +N+I +N
Sbjct: 1038 KTINNNIINDTSQSSYNNNMNSIQNTNRTNSSSSNNNISYN 1078
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 455,204,419
Number of Sequences: 1657284
Number of extensions: 7281884
Number of successful extensions: 17686
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 16173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17475
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48126133708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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