Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0473
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB21E7.04c ||SPAPB21E7.04c, SPAPB21E7.04c|S-adenosylmethionin...    27   3.5  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.7  

>SPBPB21E7.04c ||SPAPB21E7.04c,
           SPAPB21E7.04c|S-adenosylmethionine-dependent
           methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 281

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 161 RRSDIIQNLTPSLFFLPNIFIMKWKQILFSELQMAES 51
           RRS  + N+ PS  +L  +FI  WK +   +L++ E+
Sbjct: 164 RRS--LPNVIPSFEYLDFVFIDHWKDLYVPDLRVMET 198


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 344 DFYYDESIYLYVVCQSNILSQILTLY 267
           + YY ES Y+ +VC   I+ + +T +
Sbjct: 36  ELYYGESFYINIVCSRPIVDENVTTW 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,924,842
Number of Sequences: 5004
Number of extensions: 62446
Number of successful extensions: 139
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)