Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0473
         (714 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX640950-1|CAE45974.1| 1042|Homo sapiens hypothetical protein pr...    30   9.5  
BX640786-1|CAE45876.1| 1042|Homo sapiens hypothetical protein pr...    30   9.5  
BC116458-1|AAI16459.1| 1042|Homo sapiens integrator complex subu...    30   9.5  
BC105094-1|AAI05095.1| 1042|Homo sapiens integrator complex subu...    30   9.5  
BC105092-1|AAI05093.1| 1042|Homo sapiens integrator complex subu...    30   9.5  
AL513523-3|CAH71416.1| 1042|Homo sapiens integrator complex subu...    30   9.5  
AK074979-1|BAC11329.1|  794|Homo sapiens protein ( Homo sapiens ...    30   9.5  

>BX640950-1|CAE45974.1| 1042|Homo sapiens hypothetical protein
           protein.
          Length = 1042

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -3

Query: 448 PKAFDPSTNCIIRILKTRTSSLFLSEYYLTKEESKIFIMTNQ 323
           P+A  P    I+++L++RTS  FL+       E+K+  MT++
Sbjct: 278 PQALSPQFTGILQLLQSRTSRKFLACRLTPDMETKLLFMTSR 319


>BX640786-1|CAE45876.1| 1042|Homo sapiens hypothetical protein
           protein.
          Length = 1042

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -3

Query: 448 PKAFDPSTNCIIRILKTRTSSLFLSEYYLTKEESKIFIMTNQ 323
           P+A  P    I+++L++RTS  FL+       E+K+  MT++
Sbjct: 278 PQALSPQFTGILQLLQSRTSRKFLACRLTPDMETKLLFMTSR 319


>BC116458-1|AAI16459.1| 1042|Homo sapiens integrator complex subunit
           3 protein.
          Length = 1042

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -3

Query: 448 PKAFDPSTNCIIRILKTRTSSLFLSEYYLTKEESKIFIMTNQ 323
           P+A  P    I+++L++RTS  FL+       E+K+  MT++
Sbjct: 278 PQALSPQFTGILQLLQSRTSRKFLACRLTPDMETKLLFMTSR 319


>BC105094-1|AAI05095.1| 1042|Homo sapiens integrator complex subunit
           3 protein.
          Length = 1042

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -3

Query: 448 PKAFDPSTNCIIRILKTRTSSLFLSEYYLTKEESKIFIMTNQ 323
           P+A  P    I+++L++RTS  FL+       E+K+  MT++
Sbjct: 278 PQALSPQFTGILQLLQSRTSRKFLACRLTPDMETKLLFMTSR 319


>BC105092-1|AAI05093.1| 1042|Homo sapiens integrator complex subunit
           3 protein.
          Length = 1042

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -3

Query: 448 PKAFDPSTNCIIRILKTRTSSLFLSEYYLTKEESKIFIMTNQ 323
           P+A  P    I+++L++RTS  FL+       E+K+  MT++
Sbjct: 278 PQALSPQFTGILQLLQSRTSRKFLACRLTPDMETKLLFMTSR 319


>AL513523-3|CAH71416.1| 1042|Homo sapiens integrator complex subunit
           3 protein.
          Length = 1042

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -3

Query: 448 PKAFDPSTNCIIRILKTRTSSLFLSEYYLTKEESKIFIMTNQ 323
           P+A  P    I+++L++RTS  FL+       E+K+  MT++
Sbjct: 278 PQALSPQFTGILQLLQSRTSRKFLACRLTPDMETKLLFMTSR 319


>AK074979-1|BAC11329.1|  794|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90498 fis, clone NT2RP3003963. ).
          Length = 794

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -3

Query: 448 PKAFDPSTNCIIRILKTRTSSLFLSEYYLTKEESKIFIMTNQ 323
           P+A  P    I+++L++RTS  FL+       E+K+  MT++
Sbjct: 30  PQALSPQFTGILQLLQSRTSRKFLACRLTPDMETKLLFMTSR 71


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,097,263
Number of Sequences: 237096
Number of extensions: 1775721
Number of successful extensions: 2411
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2411
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8343197486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)