Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0472
         (656 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D56721 Cluster: PREDICTED: similar to CG3541-PB,...    95   2e-18
UniRef50_Q8IRK0 Cluster: CG3541-PB, isoform B; n=5; Diptera|Rep:...    79   9e-14
UniRef50_Q5VVW2 Cluster: GTPase activating Rap/RanGAP domain-lik...    34   2.6  
UniRef50_Q6UAP5 Cluster: Class I helical cytokine receptor numbe...    33   4.6  
UniRef50_Q3IJ14 Cluster: Exonuclease V, beta chain with recC and...    33   8.0  

>UniRef50_UPI0000D56721 Cluster: PREDICTED: similar to CG3541-PB,
           isoform B; n=3; Endopterygota|Rep: PREDICTED: similar to
           CG3541-PB, isoform B - Tribolium castaneum
          Length = 412

 Score = 94.7 bits (225), Expect = 2e-18
 Identities = 52/83 (62%), Positives = 62/83 (74%), Gaps = 8/83 (9%)
 Frame = +2

Query: 431 RSRRDTDD--EGSPATVELFSGLYVNEPDSL-----DNDDVISEKK-EDEICISQRNFAI 586
           R RR   D  EG+PAT+E++SGLYVNE + L     + D V SEK  ED ICISQR+FAI
Sbjct: 302 RLRRQAADPTEGTPATIEVYSGLYVNEANDLAKAGLEEDSVFSEKTPEDSICISQRSFAI 361

Query: 587 GICIAGVILMVCVIAAIAFILAR 655
           GICIAG+ILM+CVIAAI  +LAR
Sbjct: 362 GICIAGLILMLCVIAAILCLLAR 384


>UniRef50_Q8IRK0 Cluster: CG3541-PB, isoform B; n=5; Diptera|Rep:
           CG3541-PB, isoform B - Drosophila melanogaster (Fruit
           fly)
          Length = 462

 Score = 79.0 bits (186), Expect = 9e-14
 Identities = 42/82 (51%), Positives = 58/82 (70%), Gaps = 5/82 (6%)
 Frame = +2

Query: 425 KERSRRDTDDE-GSPATVELFSGLYVNEPDSL---DNDDVISEKK-EDEICISQRNFAIG 589
           K ++  D+ +E G PAT+E+FSGLYVNE ++    D D V  EK  +D +C+SQR FAI 
Sbjct: 354 KRQAAADSKEEDGLPATIEVFSGLYVNENENANDSDEDAVYKEKTLDDALCVSQRTFAIA 413

Query: 590 ICIAGVILMVCVIAAIAFILAR 655
           I IAG+ILM+ V+AA+  I+AR
Sbjct: 414 IAIAGLILMLAVVAAVLCIMAR 435


>UniRef50_Q5VVW2 Cluster: GTPase activating Rap/RanGAP domain-like
           protein 3; n=51; Coelomata|Rep: GTPase activating
           Rap/RanGAP domain-like protein 3 - Homo sapiens (Human)
          Length = 995

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 22/62 (35%), Positives = 29/62 (46%)
 Frame = +2

Query: 140 RSDAPSSLGSVK*IRKH*PWEEQCFAGSIAE*EWPLTGAEVA*VDSDDLGLIAIADRLPR 319
           R DAPSSL +    +K  PWE QCF  +             A + S D G++ + D LP 
Sbjct: 443 RGDAPSSLAASGICKKE-PWEPQCFCSNFPHEAVCADPWGQALLVSTDAGVLLVDDDLPS 501

Query: 320 NP 325
            P
Sbjct: 502 VP 503


>UniRef50_Q6UAP5 Cluster: Class I helical cytokine receptor number
           11; n=1; Tetraodon nigroviridis|Rep: Class I helical
           cytokine receptor number 11 - Tetraodon nigroviridis
           (Green puffer)
          Length = 441

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +2

Query: 434 SRRDTDDEGSPATVELFSGLYVNEPDSLDNDDVISEKKEDEICISQRNF 580
           SR  +DDEGSP +V+   G   +E DS     V+ E K +E  ++  +F
Sbjct: 384 SRSSSDDEGSPQSVQP-PGTPQSEQDSEGKGTVLGESKHEEAYVTMSSF 431


>UniRef50_Q3IJ14 Cluster: Exonuclease V, beta chain with recC and
            recD: 5' and 3' nuclease, ATPase, recombinase, helicase;
            n=2; Alteromonadales|Rep: Exonuclease V, beta chain with
            recC and recD: 5' and 3' nuclease, ATPase, recombinase,
            helicase - Pseudoalteromonas haloplanktis (strain TAC
            125)
          Length = 1213

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = -2

Query: 289  SQIIRIYLSDFCSSKWPFLFGDRSSKALLFPG-LVFANSLD*AQRTRSIGSKSRPTEK 119
            SQI R +L+DFCS      +   +S+ LL  G L F NS D AQ+T SI + +   E+
Sbjct: 853  SQIWRNHLADFCSEHTGMDYQQFTSEDLLAQGTLSFNNSAD-AQQTLSINNVTANIER 909


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 673,771,502
Number of Sequences: 1657284
Number of extensions: 13673173
Number of successful extensions: 38533
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 37078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38516
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49586781480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)