Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0472
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    27   2.4  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    27   2.4  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    27   2.4  
SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid protease|Schi...    27   2.4  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    26   5.5  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   7.3  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    25   7.3  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   7.3  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    25   9.6  

>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/47 (27%), Positives = 28/47 (59%)
 Frame = +2

Query: 419 KIKERSRRDTDDEGSPATVELFSGLYVNEPDSLDNDDVISEKKEDEI 559
           K  E  R++ ++  + A  + +    + EP+  +N++V++EKKE +I
Sbjct: 399 KETEVERKEENEAEAEAVFDDWEAA-LEEPEVAENNEVVTEKKETDI 444


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/62 (25%), Positives = 24/62 (38%)
 Frame = -2

Query: 418 ARFLLGHNMDVRDSEKEETSCMFVTYKLPNIRVSWQAVCNGDQSQIIRIYLSDFCSSKWP 239
           +R+   H+  +    K   S  F+           +A+CN    Q + I LSD     WP
Sbjct: 57  SRYYSNHSHGLVHGSKSPPSSQFLVPSFLQFNGQLKALCNNSAFQALPIKLSDL-QKHWP 115

Query: 238 FL 233
            L
Sbjct: 116 SL 117


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 583 HRHMHSRRYSDGVRHSGYRLHTGS 654
           H H H   Y  G  + GY  H+GS
Sbjct: 742 HHHHHHHHYITGHVYGGYHKHSGS 765


>SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid
           protease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 298

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 127 WVAISIRCSEFAGLSQVNSQTLALGRAVLCWIYRRIGMATY 249
           W  IS   S FA  + ++     LG  +  W+Y + G +TY
Sbjct: 237 WGLISRGFSSFANFTLID-HAAHLGGGIFGWLYAKYGYSTY 276


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 577 FRHRHMHSRRYSDGVRHS 630
           FRH+  HSR  SD   HS
Sbjct: 359 FRHKSKHSRNSSDASEHS 376


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 85  NENKHFEFLRRSSQWVAISIRCSEFAGLSQVNSQTLALGR 204
           N  K  E  R++++      R S+F  +S+++  TL LGR
Sbjct: 531 NTAKDDEPARQTNKGTTRISRSSDFTAVSEMSKDTLTLGR 570


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 307 PLAKKPEYLAICMSRTCMKFLLFHYL*RP 393
           P   KP+ +  C+S+  +KF+ F+   RP
Sbjct: 283 PSVSKPQEILSCLSQIPIKFIFFYQDVRP 311


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +3

Query: 132 RDFDPMLRVRWAQSSEFANTSPGKSSALLDLSPNRNGHLL 251
           RD  P   +RW +  EF     GK S  L L    NG +L
Sbjct: 279 RDVHP---IRWVEDKEFQKLEEGK-SVCLRLYQRNNGSIL 314


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 614 SE*RRLCICRWRNYVAKYISRPLSF 540
           SE + LC+  W NYV   IS+ + F
Sbjct: 550 SEVKELCLYVWDNYVELSISKNIFF 574


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,807,792
Number of Sequences: 5004
Number of extensions: 59066
Number of successful extensions: 191
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)