Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0472
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0240 + 1852186-1852371,1854183-1854237,1854391-1856267,185... 34 0.087
12_01_0237 + 1782593-1782778,1784942-1784996,1785086-1787028,178... 32 0.46
07_03_1174 + 24538522-24538682,24539229-24539430,24539529-245396... 30 1.4
10_08_0048 - 14441540-14441620,14442044-14442111,14442275-144424... 29 4.3
05_06_0059 - 25264704-25266032 28 7.5
01_01_0843 + 6582822-6583004,6583366-6583464,6583571-6583651,658... 28 7.5
11_03_0128 - 10437407-10438049,10438097-10438272 27 9.9
11_01_0274 - 2050667-2052115 27 9.9
01_01_0822 - 6401993-6402133,6402542-6402708,6402865-6402966,640... 27 9.9
>11_01_0240 +
1852186-1852371,1854183-1854237,1854391-1856267,
1856342-1856500,1856692-1856863,1856965-1857263,
1857539-1857844
Length = 1017
Score = 34.3 bits (75), Expect = 0.087
Identities = 19/42 (45%), Positives = 29/42 (69%)
Frame = -3
Query: 492 KPEKSSTVAGEPSSSVSRRLLSFILQGSY*DTIWTLEIVKKK 367
K S+T++GE +S VS R LS +LQG + +T + E+VK+K
Sbjct: 456 KSVTSNTISGELNSVVSSRTLSLLLQGIFENT--SAEVVKEK 495
>12_01_0237 +
1782593-1782778,1784942-1784996,1785086-1787028,
1787103-1787261,1787432-1787603,1787705-1788003,
1788278-1788583
Length = 1039
Score = 31.9 bits (69), Expect = 0.46
Identities = 18/42 (42%), Positives = 28/42 (66%)
Frame = -3
Query: 492 KPEKSSTVAGEPSSSVSRRLLSFILQGSY*DTIWTLEIVKKK 367
K S+T++GE +S VS LS +LQG + +T + E+VK+K
Sbjct: 478 KSVTSNTISGELNSVVSSSTLSLLLQGIFENT--SAEVVKEK 517
>07_03_1174 +
24538522-24538682,24539229-24539430,24539529-24539675,
24539832-24539944,24540580-24540791,24541194-24541258,
24541581-24541751,24542543-24542887,24542980-24543173,
24543292-24543448,24543946-24544010,24544166-24544331
Length = 665
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 32 GRSRGQKLVQYKGGLNVLMKINTLSFFADLLSGSRFRSDAP 154
G ++G+ ++ +GG N+ N++S A +L G +FR D P
Sbjct: 303 GFAQGRIVMALEGGYNLRSIANSVSACAKVLLGDKFRFDTP 343
>10_08_0048 -
14441540-14441620,14442044-14442111,14442275-14442493,
14442506-14444508,14447541-14448410,14448533-14448576,
14449920-14450093
Length = 1152
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/55 (27%), Positives = 22/55 (40%)
Frame = +3
Query: 426 RKGAAATQTTKAPQRQWNSSPAYMSTSQIRLTTTTLSAKRKRTRYVFRNVISPSA 590
+ G AA Q P+R+W S M T RT ++F N + S+
Sbjct: 261 KSGGAAVQYAPPPRRRWMSPREMMEEMSEDYTCVIARGANPRTTHIFDNRVVESS 315
>05_06_0059 - 25264704-25266032
Length = 442
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 461 SPATVELFSGLYVNEPDSLDNDDVISEKKEDEICI 565
SP++ E G Y + D D DD S KK D C+
Sbjct: 298 SPSSDEPSLGNYSGDDDDDDGDDGESSKKPDTTCL 332
>01_01_0843 +
6582822-6583004,6583366-6583464,6583571-6583651,
6585632-6585889
Length = 206
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 88 ENKHFEFLRRSSQWVAISIRCSEFAGLSQVNSQTL 192
+ +HF+ + S WVA RC+ GL +N+ TL
Sbjct: 56 DGRHFKEYQDYSGWVAQKNRCAAVNGLFALNNITL 90
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -3
Query: 282 SSEST*ATSAPVSGHSYSAIDPAKHCSSQG*CLRIHLTEPSELGASDRNRDPLRRSA 112
+S +T T + +S S CSS RI +T P + G N D L + A
Sbjct: 138 TSSTTCRTCCRATPNSTSPCKTGSRCSSSTTARRISITSPRKRGRGGSNDDDLTKYA 194
>11_01_0274 - 2050667-2052115
Length = 482
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 145 RCSEFAGLSQVNSQTLALGRAVLC 216
RC+ F LS + SQ A GR V C
Sbjct: 108 RCTSFESLSAIVSQLAARGRPVTC 131
>01_01_0822 -
6401993-6402133,6402542-6402708,6402865-6402966,
6403437-6403577,6403685-6403768,6403858-6404164,
6404286-6404357
Length = 337
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 416 CKIKERSRRDTDDEGSPATVELFSGLYVNEPDSLD--NDD 529
C+ E S +DT++ G + FSG+ ++ + D NDD
Sbjct: 219 CEEPEHSTKDTEESGKHGDLSKFSGVTISHDLTTDMSNDD 258
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,300,873
Number of Sequences: 37544
Number of extensions: 387870
Number of successful extensions: 1133
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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