Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0472
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44796| Best HMM Match : Cornifin (HMM E-Value=1.7)                  31   1.1  
SB_34111| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   3.3  
SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)                   29   4.4  
SB_59316| Best HMM Match : LRR_1 (HMM E-Value=0)                       28   7.7  
SB_15286| Best HMM Match : I-set (HMM E-Value=0.72)                    28   7.7  
SB_3501| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_44796| Best HMM Match : Cornifin (HMM E-Value=1.7)
          Length = 165

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 447 QTTKAPQRQWNSSPAYMSTSQIRLTTTTLSAKRKRTRYVFRNVISP 584
           +TTK PQ Q  + P + +T+  R   T +   R       RN ++P
Sbjct: 24  RTTKTPQHQNTAKPQHRNTTTPRYHNTAIPQHRDTATQQHRNTVTP 69


>SB_34111| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 757

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 419 KIKERSRRDTDDEGSPATVELFSGLYVNEPDSLDNDDVISEKKEDE 556
           ++ + ++RDT+D G+    E      +NE    ++DDVI E+ E E
Sbjct: 75  RVVDVTKRDTEDLGTVKCEEQEEVQIMNEVGEEEDDDVIFEEAEKE 120


>SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)
          Length = 2111

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 21/81 (25%), Positives = 34/81 (41%)
 Frame = +3

Query: 339 LYVTNMHEVSSFSLSLTSILCPNRNLAR*RKGAAATQTTKAPQRQWNSSPAYMSTSQIRL 518
           L +     +SSF+ S+ + LCPN+ L +  + A       A Q   + +  Y+  S+I L
Sbjct: 24  LQIVESGRISSFTSSIVAKLCPNKTLEKEERFAVGADFFTAAQLP-HVTATYVIPSKISL 82

Query: 519 TTTTLSAKRKRTRYVFRNVIS 581
                S        VF +  S
Sbjct: 83  DLNLTSGVYLLKARVFNDASS 103


>SB_59316| Best HMM Match : LRR_1 (HMM E-Value=0)
          Length = 680

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = -2

Query: 376 EKEETSCMFVTYKLPNIRVSWQAVCNGDQSQIIRIYLSD--FCSSKWPFLFGDRSSKAL 206
           E+ E++C        N  ++W     GD   II + LSD     S  P  FG  S K L
Sbjct: 219 ERFESACFLEHLYADNNNITWLPDWFGDLPNIINLCLSDNELSDSALPDHFGSISGKTL 277


>SB_15286| Best HMM Match : I-set (HMM E-Value=0.72)
          Length = 187

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 488 GLYVNEPDSLDNDDVISEKKEDE 556
           GL+ N  D  DNDD  ++K ED+
Sbjct: 108 GLFNNNDDENDNDDSYNDKDEDD 130


>SB_3501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +3

Query: 468 RQWNSSPAYMSTSQIRLTTTTLSAKR 545
           RQW+ S   ++TS+I LTT + +A+R
Sbjct: 54  RQWSHSTGRVNTSRIPLTTPSQTAQR 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,946,437
Number of Sequences: 59808
Number of extensions: 441512
Number of successful extensions: 1198
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)