Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0472
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024214-5|AAF36077.2|  605|Caenorhabditis elegans Hypothetical ...    31   0.54 
AC024214-4|AAM97985.2|  603|Caenorhabditis elegans Hypothetical ...    31   0.54 
AC024214-3|AAU05554.1|  577|Caenorhabditis elegans Hypothetical ...    31   0.54 
U00051-14|AAM29692.1|  469|Caenorhabditis elegans Hypothetical p...    28   5.1  
U00051-13|AAA91358.1|  491|Caenorhabditis elegans Hypothetical p...    28   5.1  
Z37139-8|CAA85487.1|  376|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U97011-1|AAB52324.1|  174|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AL132952-11|CAB61148.1|  136|Caenorhabditis elegans Hypothetical...    27   8.9  
AF125955-6|AAD14714.1|  168|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AC024214-5|AAF36077.2|  605|Caenorhabditis elegans Hypothetical
           protein Y77E11A.7a protein.
          Length = 605

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 425 KERSRRDTDDEGSPATVELFSGLYVNEPDSLDN 523
           ++R  R  DD G     E+F  +Y NEPDSL N
Sbjct: 368 RKRMHRRMDDNGVYYDDEMFEEVYYNEPDSLLN 400


>AC024214-4|AAM97985.2|  603|Caenorhabditis elegans Hypothetical
           protein Y77E11A.7b protein.
          Length = 603

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 425 KERSRRDTDDEGSPATVELFSGLYVNEPDSLDN 523
           ++R  R  DD G     E+F  +Y NEPDSL N
Sbjct: 366 RKRMHRRMDDNGVYYDDEMFEEVYYNEPDSLLN 398


>AC024214-3|AAU05554.1|  577|Caenorhabditis elegans Hypothetical
           protein Y77E11A.7c protein.
          Length = 577

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 425 KERSRRDTDDEGSPATVELFSGLYVNEPDSLDN 523
           ++R  R  DD G     E+F  +Y NEPDSL N
Sbjct: 340 RKRMHRRMDDNGVYYDDEMFEEVYYNEPDSLLN 372


>U00051-14|AAM29692.1|  469|Caenorhabditis elegans Hypothetical
           protein F42G9.1b protein.
          Length = 469

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/44 (27%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +2

Query: 428 ERSRRDTDDEGSPATVELFSGLYVNEPDSLDND-DVISEKKEDE 556
           ++S+ +TD E +P++     G+   E D  D+D + +++++ED+
Sbjct: 216 KKSKSETDAETAPSSSSGVDGVATEEEDEDDSDKEFVADEEEDD 259


>U00051-13|AAA91358.1|  491|Caenorhabditis elegans Hypothetical
           protein F42G9.1a protein.
          Length = 491

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/44 (27%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +2

Query: 428 ERSRRDTDDEGSPATVELFSGLYVNEPDSLDND-DVISEKKEDE 556
           ++S+ +TD E +P++     G+   E D  D+D + +++++ED+
Sbjct: 238 KKSKSETDAETAPSSSSGVDGVATEEEDEDDSDKEFVADEEEDD 281


>Z37139-8|CAA85487.1|  376|Caenorhabditis elegans Hypothetical
           protein C14B1.4 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +3

Query: 126 VGRDFDPMLRVRWAQSSEFANTSPGKSSALLDLSPNRNGHLLEQKSLK*IRMIWD 290
           V   FD  +R+   ++     T P  S  +  +S NR+G L+   S   +  IWD
Sbjct: 187 VSGSFDESVRIWDVKTGMCIKTLPAHSDPVSAVSFNRDGSLIASGSYDGLVRIWD 241


>U97011-1|AAB52324.1|  174|Caenorhabditis elegans Hypothetical
           protein F31F7.3 protein.
          Length = 174

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 122 EDRRRNSKCLFSLKHSARLYIELAFARDFVRV 27
           E+R R S CLF   H+ R Y    FA  +V +
Sbjct: 62  EERERCSHCLFLFLHNLRTYESNFFADKYVDI 93


>AL132952-11|CAB61148.1|  136|Caenorhabditis elegans Hypothetical
           protein Y51H4A.16 protein.
          Length = 136

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 375 KKKKLHACS*HTNCQIFGFLG-KRSAMAINPKSSEST 268
           KKKK+  C+   NC+ F F+     A+A++  S E T
Sbjct: 3   KKKKICTCNARKNCENFQFVRVVERAVALHKNSKEKT 39


>AF125955-6|AAD14714.1|  168|Caenorhabditis elegans Hypothetical
           protein F46E10.3 protein.
          Length = 168

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +2

Query: 509 DSLDNDDVISEKKEDEICISQRNFAIGICIAGVIL 613
           +S  N   + +K  + IC++ +N  + +CI+G ++
Sbjct: 11  ESKGNSYGVCKKTPERICLTSKNELMEVCISGTVI 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,488,790
Number of Sequences: 27780
Number of extensions: 328845
Number of successful extensions: 972
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)