Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0472
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21300.1 68415.m02535 kinesin motor family protein contains P...    31   0.67 
At2g01750.1 68415.m00104 expressed protein                             29   2.1  
At4g09260.1 68417.m01534 hypothetical protein nearly identical w...    29   2.7  
At4g09210.1 68417.m01526 hypothetical protein                          29   2.7  
At5g17830.1 68418.m02090 hypothetical protein contains Pfam doma...    29   3.6  
At4g18380.1 68417.m02728 F-box family protein contains F-box dom...    29   3.6  
At5g60350.1 68418.m07566 hypothetical protein                          28   6.3  
At5g46350.1 68418.m05705 WRKY family transcription factor contai...    28   6.3  
At3g05370.1 68416.m00586 disease resistance family protein conta...    28   6.3  
At1g04950.2 68414.m00493 TATA box-binding protein-associated fac...    27   8.3  
At1g04950.1 68414.m00492 TATA box-binding protein-associated fac...    27   8.3  

>At2g21300.1 68415.m02535 kinesin motor family protein contains Pfam
           profile: kinesin motor domain PF00225
          Length = 862

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
 Frame = +3

Query: 342 YVTNMHEVSSFSLSLTSILCPNRNLAR*R----KGAAATQTTKAPQRQWNSSPAYMST-- 503
           +V     +  ++ ++  +L P+    R R    KGAA  + T+   R WN     +S   
Sbjct: 143 FVVKFSAIEIYNEAIRDLLSPDSTPLRLRDDPEKGAAVEKATEETLRDWNHLKELISVCE 202

Query: 504 SQIRLTTTTLSAKRKRTRYVFRNVISPSA 590
           +Q ++  T+L+ +  R+  + +  +  SA
Sbjct: 203 AQRKIGETSLNERSSRSHQIIKLTVESSA 231


>At2g01750.1 68415.m00104 expressed protein 
          Length = 629

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +2

Query: 20  TTPRGRS--RGQKLVQYKGGLNVLMKINTLSFFADLLSGSRFRS 145
           +TP GRS   G    Q  GG +++ K+ +  FF+     S+FRS
Sbjct: 401 STPEGRSMSNGPSRRQSLGGADIIPKLTSNGFFSKRSPSSQFRS 444


>At4g09260.1 68417.m01534 hypothetical protein nearly identical with
           protein T8A17_40 cause of location on repetitive section
          Length = 154

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = -3

Query: 342 TNCQIFGFLGKRSAMAINPKSSEST*ATSAPVSGHSYSAIDPAKHCSSQG 193
           +NC+ FG +GK S  A   K           VSGHS + IDP    S +G
Sbjct: 89  SNCE-FGVVGKISRRARISKFRSHDPRVLRGVSGHSGALIDPTTVVSDRG 137


>At4g09210.1 68417.m01526 hypothetical protein
          Length = 154

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = -3

Query: 342 TNCQIFGFLGKRSAMAINPKSSEST*ATSAPVSGHSYSAIDPAKHCSSQG 193
           +NC+ FG +GK S  A   K           VSGHS + IDP    S +G
Sbjct: 89  SNCE-FGVVGKISRRARISKFRSHDPRVLRGVSGHSGALIDPTTVVSDRG 137


>At5g17830.1 68418.m02090 hypothetical protein contains Pfam domain,
           PF04515: Protein of unknown function, DUF580
          Length = 474

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 321 TRIFGNLYVTNMHEVSSFSLSLTSILCPNRNLA 419
           T ++G+L+VTN HE +  ++S  + + P R  A
Sbjct: 163 TAVYGSLHVTNRHEFTFQTMSTATGILPARTRA 195


>At4g18380.1 68417.m02728 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 380

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 22/68 (32%), Positives = 34/68 (50%)
 Frame = -3

Query: 339 NCQIFGFLGKRSAMAINPKSSEST*ATSAPVSGHSYSAIDPAKHCSSQG*CLRIHLTEPS 160
           NC I G     ++  I P +S+ T A+SAPV+    +   P    ++ G  LR+  T  S
Sbjct: 193 NCVILG-----ASSVIPPTNSDKTEASSAPVAAVEDNGSIPESFYTNGGLKLRVVWTISS 247

Query: 159 ELGASDRN 136
            + AS R+
Sbjct: 248 LIAASARH 255


>At5g60350.1 68418.m07566 hypothetical protein
          Length = 292

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 410 EPCKIKERSRRDTDDEGSPATVELFSGLYVNEPDSLDNDDVISEKKEDEI 559
           E  KI++      D EG  +TVE      +N    L  D+ ISE++ +E+
Sbjct: 54  EQKKIEKCWMMSEDGEGGKSTVEYDGSSILNTSGVLRGDEDISEEEPEEV 103


>At5g46350.1 68418.m05705 WRKY family transcription factor contains
           similarity to WRKY-type DNA-binding protein
          Length = 326

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 446 TDDEGSPATVELFSGLYVNEPDSLDNDDV 532
           T  + +P++  +FS L +N P S  NDD+
Sbjct: 254 TASDYNPSSSPIFSDLIINTPRSFSNDDL 282


>At3g05370.1 68416.m00586 disease resistance family protein contains
           leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2 disease resistance
           protein GB:AAC15780 from [Lycopersicon pimpinellifolium]
          Length = 860

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 19/65 (29%), Positives = 35/65 (53%)
 Frame = +2

Query: 125 SGSRFRSDAPSSLGSVK*IRKH*PWEEQCFAGSIAE*EWPLTGAEVA*VDSDDLGLIAIA 304
           SG+RF  + P S+G +K +R H       F G+I     P + A +  +++ DL L  ++
Sbjct: 675 SGNRFSGNIPESIGLLKELR-HLNLSSNAFTGNI-----PQSLANLMKLEALDLSLNQLS 728

Query: 305 DRLPR 319
            ++P+
Sbjct: 729 GQIPQ 733


>At1g04950.2 68414.m00493 TATA box-binding protein-associated factor
           (TAF) family protein contains Pfam profile: PF02969 TATA
           box binding protein associated factor
          Length = 549

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 297 PLQTACQETRIFGNLYVTNMHEVSSFSLSLTSILC 401
           P    C  +R  GN +  N  E+  F+ +L S++C
Sbjct: 259 PSVVTCLVSRKLGNRFADNHWELRDFAANLVSLIC 293


>At1g04950.1 68414.m00492 TATA box-binding protein-associated factor
           (TAF) family protein contains Pfam profile: PF02969 TATA
           box binding protein associated factor
          Length = 549

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 297 PLQTACQETRIFGNLYVTNMHEVSSFSLSLTSILC 401
           P    C  +R  GN +  N  E+  F+ +L S++C
Sbjct: 259 PSVVTCLVSRKLGNRFADNHWELRDFAANLVSLIC 293


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,652,621
Number of Sequences: 28952
Number of extensions: 309737
Number of successful extensions: 977
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)