Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0471
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual 31 0.11
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 27 1.8
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces... 27 3.2
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 26 5.6
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 26 5.6
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 25 7.4
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 25 7.4
SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch... 25 9.7
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 9.7
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 25 9.7
>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 31.5 bits (68), Expect = 0.11
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = +3
Query: 435 FNMKEELEEGHFDTQGHYHWKK-EKEIR-DGWLD 530
FN+KE++EEG FD G++ K + E + D WL+
Sbjct: 162 FNLKEDMEEGDFDENGNFIRKNYDPESQYDAWLN 195
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 56 LDRHKNIDFIDSVPNTRQQTHNHN 127
L H+N+ F +S+P Q HN++
Sbjct: 474 LSCHRNLSFSESLPTAEDQVHNNH 497
>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 374
Score = 26.6 bits (56), Expect = 3.2
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
Frame = -2
Query: 136 LFLIVIVC----LLPCVRYAINE---INVFM-SIKVWSQISIINFIMCIMTLV 2
LFL+ +C L P AI+E +N+F S + W+ + +F MC++TL+
Sbjct: 148 LFLVYYICRSRRLSPTDLVAIDEYFLVNLFKTSEEAWNDEDMDSFGMCVLTLL 200
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 25.8 bits (54), Expect = 5.6
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = -1
Query: 302 LAILRGLFYFVY*CFGSGTL*HFGKVT**YFGRLFLNR*TQIE*IRFN*VGTRLVP 135
L +L +FY +Y CFG+ + G + Y LF N + I I+ +G L P
Sbjct: 27 LLVLSLIFYILYICFGTTSYILSGIILGAYVNSLFHNNHSVILNIKHPELGEPLKP 82
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 501 EKEIRDGWLDNIDWVKVKGRPEDKYKIHHSD 593
E + W+ +D +K K + ED YK H D
Sbjct: 447 ENSFQKAWISLMDKLKKKEKDEDVYKDVHFD 477
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.4 bits (53), Expect = 7.4
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 96 LTHGNRHTITIKKRYQPCTNLVESDSLNLSSPIQEKAPKILLGY 227
LT N H + K ++ C N D +NLS+ ++ K LL Y
Sbjct: 712 LTILNLHDRSQLKLFEVCHNSEFKDPINLSNCLRNLLEKQLLSY 755
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 117 TITIKKRYQPCTNLVESDSLNLSSPIQEK 203
T+TI+K + TN + + LSS ++ K
Sbjct: 500 TVTIRKPIESSTNKISENPTTLSSKVENK 528
>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 94
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/63 (23%), Positives = 27/63 (42%)
Frame = +3
Query: 87 IAYLTHGNRHTITIKKRYQPCTNLVESDSLNLSSPIQEKAPKILLGYFTKMSKRPASEAL 266
+ +T+ R + K + TNL+ SDS + + I LG + + A L
Sbjct: 11 VQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRGENVAMVGL 70
Query: 267 IDE 275
++E
Sbjct: 71 VNE 73
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.0 bits (52), Expect = 9.7
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = -1
Query: 602 SFFIAMMNFIFILWSTFYFNPVNVIKPSITNFFFFF--PMVMSLCIKMPFFKFFFHVK 435
S F+ I L T++ P SI F F P++ +L + F KFF+ V+
Sbjct: 1031 SNFLTWEIIISDLTRTYHLIPRGSSTVSIILFSLFLVSPLICALATMLAFQKFFYQVR 1088
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 171 SLNLSSPIQEKAPKILLGYFTKMSK 245
SL+ SP + A ILLGYF K+ K
Sbjct: 1169 SLDFISPECDDAYVILLGYFQKLLK 1193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,025,350
Number of Sequences: 5004
Number of extensions: 37010
Number of successful extensions: 129
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -