Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0471
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0099 + 12353777-12353877,12354022-12354220,12354720-123548...    43   2e-04
03_01_0424 - 3253179-3253367,3253480-3253556,3253654-3253739,325...    30   1.4  
10_02_0148 - 5859664-5859828,5859916-5860043,5860310-5860451,586...    29   2.5  
08_02_1544 + 27787089-27787172,27787448-27787612,27787741-277878...    29   3.3  
01_06_1806 + 40012952-40016836                                         28   7.6  

>09_03_0099 +
           12353777-12353877,12354022-12354220,12354720-12354845,
           12354935-12355093,12356286-12356415,12356551-12356592,
           12357507-12357806,12357933-12357984,12358157-12358234,
           12359133-12359229
          Length = 427

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 15/37 (40%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
 Frame = +3

Query: 432 PFNMKEELEEGHFDTQGHY-HWKKEKEIRDGWLDNID 539
           PFN+++E EEG+FD  G++  + +  +I+D WLD+++
Sbjct: 114 PFNLEQEREEGYFDENGNFVEYARGNDIKDAWLDSVE 150


>03_01_0424 -
           3253179-3253367,3253480-3253556,3253654-3253739,
           3253844-3254321,3254393-3254519,3254624-3254740,
           3254853-3254966,3256650-3256715,3257738-3258117,
           3258217-3258496
          Length = 637

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +3

Query: 81  SLIAYLTHGNRHTITIKKRYQPCTNLVESDSLNLSSPIQEKAPK 212
           SL+ YLTH   H I +    +   N   + SLN SSP    A K
Sbjct: 265 SLLVYLTHAENHGIQVIGYLKKGLNPPSATSLNFSSPYMMLALK 308


>10_02_0148 -
           5859664-5859828,5859916-5860043,5860310-5860451,
           5860548-5860643,5860836-5860976,5861799-5861973,
           5862416-5862702,5862777-5862870,5863244-5863335,
           5863459-5863553,5863648-5863759
          Length = 508

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +3

Query: 63  DIKTLISLIAYLTHGNRHTITIKK 134
           D+ +L S++  LTHGN+HT  I++
Sbjct: 253 DMASLASILEKLTHGNKHTEKIRR 276


>08_02_1544 +
           27787089-27787172,27787448-27787612,27787741-27787850,
           27788360-27788513,27788643-27788937,27788996-27789798
          Length = 536

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
 Frame = -1

Query: 578 FIFILWSTFYFNPVNVIKPSITNFFFFFPMVMS-----LCIKMPFFKFFFHVKRCY 426
           ++F+  + F+F  ++++KP    F+F + +V+S     L   + FF  FF  +  Y
Sbjct: 475 YLFLYATFFFFAKLSIVKPVSVMFYFGYMLVVSYAFFLLTGTIGFFSCFFFTRFIY 530


>01_06_1806 + 40012952-40016836
          Length = 1294

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 81  SLIAYLTHGNRHTITIKKRYQPCTNLVESDSLN 179
           SL + L H N  T TI + ++ CTNL E + L+
Sbjct: 448 SLHSLLLHHNNLTGTIDEAFKGCTNLTELNLLD 480


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,047,350
Number of Sequences: 37544
Number of extensions: 203320
Number of successful extensions: 569
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)